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19 protocols using milli q reagent grade water system

1

Synthesis and Characterization of Anticancer Drug-Loaded AuNPs

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The anticancer drug, GEM, was received from Selleckchem (Houston, TX, USA), and the anticancer drug, DOX, was purchased from Sigma-Aldrich Co. (St Louis, MO, USA); the drugs were used as received. The MBA, N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC), N-hydroxysuccinimide (NHS), FA, GSH, 2-morpholinoethanesulfonic acid (MES), ethanolamine hydrochloride, dimethyl sulfoxide (DMSO), and p-aminothiophenol (PATP) were purchased from Aldrich Chemical Co. (Milwaukee, WI, USA). Phosphate-buffered saline (PBS) solution was prepared with the composition of 137 mM NaCl, 2.7 mM KCl, 10 mM KH2PO4, 1.8 mM Na2HPO4 using reagents from Thermo Fisher Scientific (Waltham, MA, USA). Spherical AuNPs with 50 nm diameter were supplied by Nanopartz Inc. (Loveland, CO, USA). All aqueous solutions were prepared with deionized water (resistivity of 18.2 MΩ cm) purified with a Milli-Q reagent grade water system (Merck Millipore, Billerica, MA, USA).
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2

CD Spectroscopy of Protein Folding

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CD spectra were
recorded at 0, 25,
37, and 60 °C. The concentration of the protein solution was
0.1 mg/mL (2.6 microMolar, MW 37 760
Da) in PBS (10 mM phosphate-buffered saline, pH 7.0) and in 2,2,2-trifluoroethanol
(TFE) using a J-815 spectropolarimeter (Jasco, Tokyo, Japan), equipped
with a Haake thermostat (Thermo Fisher Scientific, Waltham, MA, USA),
averaging 16 scans. Baselines were corrected by subtracting the solvent
contribution. Cylindrical, fused quartz cells of 0.1 cm path length
(Hellma, Müllheim, Germany) were employed. The data are expressed
in terms of [θ]MRW, the mean residue ellipticity
(degree–square centimeter per decimole) value, in order to
compare the data obtained for different peptide lengths. TFE was purchased
from Romil (Waterbeach, Cambridge, UK). Deionized water was purified
using a Milli-Q reagent-grade water system from Merck Millipore (Milano,
Italy).
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3

Deionized water purification protocol

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All chemicals were purchased from Sigma-Aldrich, unless otherwise stated. All aqueous solutions were prepared with deionized water (resistivity of 18.2 MΩ.cm) purified with a Milli-Q reagent grade water system (Merck Millipore, Billerica, MA, USA).
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4

Microplastics and Fluorescent Dyes Characterization

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The microplastics used in this study were SPHERO Ultra Rainbow Fluorescent Particles URFP-100 (diameter, 8.0 -12.9 μm; concentration, 1 × 10 7 particles/mL) and URFP-30 (diameter, 3.0 -3.4 μm; concentration, 1 × 10 7 particles/mL), and Latex Microsphere Suspension 5320A (LPS32; polystyrene particle; average diameter, 3.2 μm; coefficient of variation, ≤ 5%; concentration, 10% solids by weight (w/w); density, 1.05 g/mL) from Thermo Fisher Scientific. Phosphate-buffered saline (PBS) was prepared from a 10-fold dilution of 10X D-PBS (100 mM phosphate, pH 7.4; Fujifilm Wako Pure Chemical, Osaka, Japan). Tween 20 (polyoxyethylene sorbitan monolaurate) was obtained from Tokyo Chemical Industry (TCI; Tokyo, Japan). The fluorescent dyes Fluorescein, Rhodamine 6G, and Methylene Blue (Fig. 1), were obtained from Fujifilm Wako. All aqueous solutions were prepared with deionized and charcoal-treated water (specified resistance > 18.2 MΩ cm), obtained using a Milli-Q reagentgrade water system (Merck Millipore; Bedford, MA).
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5

Anticancer Drugs Conjugation to Apoferritin

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The anticancer drugs, epirubicin (EPI), idarubicin (IDA), and daunorubicin (DAU), were received from Selleckchem (Houston, TX, USA), and doxorubicin (DOX) was purchased from Sigma-Aldrich Co. (St Louis, MO, USA); the drugs were used as received. The apoferritin from equine spleen (APO) was purchased from Sigma-Aldrich Co. (St Louis, MO, USA). N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC), N-hydroxysuccinimide (NHS), folic acid, and other chemicals were obtained from Aldrich Chemical Co. (Milwaukee, WI, USA) and were of analytical grade and used as received. Phosphate-buffered saline (PBS) pH 7.4 consisted of 1.8 mM Na2HPO4, 137 mM NaCl, 2.7 mM KCl, and 10 mM KH2PO4. McIlvain buffer (MI buffer) solutions (pH 3.6, 4.6, and 5.6) were prepared from 0.2 M Na2HPO4 and 0.1 M citric acid stock solutions. All aqueous solutions were prepared with deionized water (resistivity of 18.2 MΩ cm) purified with a Milli-Q reagent grade water system (Merck Millipore, Billerica, MA, USA).
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6

Microplastics Characterization and Fluorescence

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The microplastics used in this study were Latex Microsphere Suspension 7520A (PS; polystyrene particle; average diameter 19 µm; coefficient of variation, ≤16%; liquid suspension; concentration, 10% solids by weight (w/w); density 1.05 g/mL) from Thermo Fisher Scientific (Tokyo, Japan), Polyethylene Microsphere CPMS-0.96 20–27 µm (PE; polyethylene particles; diameter range, 20–27 µm; particles within this diameter range, >90%; dry; density, 0.96 g/mL) from Cospheric (Santa Barbara, CA, USA), and Polypropylene Microsphere PPS-WHT-0.9 2.45 ± 0.05 mm (PP; polypropylene particles; diameter, 2.45 ± 0.05 mm; dry; density, ~1 g/mL) from Cospheric. The fluorescent SPHERO Ultra Rainbow Fluorescent Particles URFP-100 (diameter, 8.0–12.9 µm; concentration, 1 × 107 particles/mL; Thermo Fisher Scientific) were used as the fluorescent standard. The fluorescent dyes Nile Red, Fluorescein, and Rhodamine 6G were obtained from Fujifilm Wako. All aqueous solutions were prepared with deionized and charcoal-treated water (specified resistance >18.2 MΩ cm), obtained using a Milli-Q reagent-grade water system (Merck Millipore; Bedford, MA, USA).
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7

Development and Optimization of Amphotericin B-Loaded PLGA Nanoparticles

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Amphotericin B (AmB) (99.8% purity) and Nicardipine Hydrochloride (98% purity), the internal standard (IS), were purchased from Sigma–Aldrich (St. Louis, MO, USA different types of Poly(d,l-lactide-co-glycolide) (Table 1) were supplied by Boehringer Ingelheim (Ingelheim, Germany). Miglyol®-812 neutral oil was obtained from Sasol (GmbH, Germany,). Vitamin E (TPGS-NF) grade was purchased from Peboc (Eastman, UK). Pluronic F68 Prilled was obtained from Ruger Chemical Co. Inc. (Irvington, New Jersey, USA). All other reagents and chemicals were HPLC analytical grade, and were used as received. Water was deionized and purified by a Milli-Q Reagent Grade water system from Millipore Corporation (Bedford, MX, USA).

Composition of the use pegylated PLGA–PEG copolymers types.

SymbolNamePolymer typeCompositionLactic to glycolic acid ratioContent of PEG (%)Molecular weight (Dalton)
ARGPd 50105DiblockPLGA–PEG 60001:1105000
BRGPt 50106TriblockPLGA–PEG 6000-PLGA1:1106000
CRGPd 50155DiblockPLGA–PEG 60001:1156000
DRGPd 5055DiblockPLGA–PEG 60001:155000
E7R 203 HMonoblockPoly(d,l-lactide)18,000–28,000
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8

Standardized UPLC-MS Protocol

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All solvents were high performance liquid chromatography grade and were used without modification. All standard compounds were purchased from Sigma-Aldrich (St. Louis, MO, USA). Formic acid, methanol and acetonitrile were obtained from Merck (Merck KGaA, Darmstadt, Germany). Distilled water was produced by a Milli-Q reagent-grade water system (Millipore; Billerica, MA, USA). UPLC was performed on a Thermo Fisher Accela system and mass spectrometry was performed on an LTQ Orbitrap XL hybrid mass spectrometer (both from Thermo Fisher Scientific, Franklin, MA, United States).
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9

Aptamer-Based RBP-4 Detection Protocol

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MCH, K3[Fe(CN)6] and K4[Fe(CN)6], PBS buffer and MgCl2 were purchased from Sigma-Aldrich (Poznan, Poland). Potassium hydroxide, sulfuric acid, ethanol and methanol were obtained from POCh (Gliwice, Poland). Alumina slurries with particle sizes of 0.3 and 0.05 µm were produced by Buehler (Lake Bluff, IL, USA). The Apt-RBP-4 sequence of: 5’-ACA GTA GTG AGG GGT CCG TCG TGG GGT AGT TGG GTC GTG G-3’, functionalized with a thiol group (-SH) at its 5’-end, was purchased from Biomers (Ulm, Germany). The aptamer sequence was taken from a paper by Lee and co-workers. RBP-4 was obtained from Abcam (ab111460). Vaspin (SRP4915) and adiponectin (SRP4901) were purchased from Sigma-Aldrich. All aqueous solutions were prepared with deionized and charcoal-treated water (resistivity of 18.2 MΩ cm) filtered with a Milli-Q reagent-grade water system (Millipore, Bedford, MA, USA). Before each measurement, all solutions were purged with nitrogen (ultrapure 6.0, Air Products, Warsaw, Poland) for 10 min in order to remove oxygen.
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10

Synthesis and Characterization of DPM-AR and TPY-NHS

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The DPM-AR (Scheme 1B) and the terpyridine-NHS (TPY–NHS) were synthesized at the Department of Chemistry, KU Leuven, Leuven. The procedure for synthesis was briefly described in the Supplementary Materials (Scheme S1) [23 (link)]. AHT, MBL, cobalt (II) acetate Co(OAc)2, dichloromethane (DCM), sodium chloride (NaCl), sodium sulfate (Na2SO4), sodium bromide (NaBr), sodium nitrate (NaNO3) and boric acid (H3BO3) were purchased from Sigma-Aldrich (Poznań, Poland). Potassium hydroxide (KOH), sulfuric acid (H2SO4), nitric acid (HNO3) and methanol (MeOH) were obtained from Avantor Performance Materials (Gliwice, Poland). All reagents were of analytical grade. All aqueous solutions were prepared with deionized and charcoal-treated water (resistivity of 18.2 MΩ cm) purified with a Milli-Q reagent grade water system (Millipore, Bedford, MA, USA). These solutions were deoxygenated by purging with nitrogen (ultrapure 6.0, Air Products, Warszawa, Poland) for 15 min.
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