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6 protocols using accutof jms t100lc mass spectrometer

1

Comprehensive Analytical Characterization of Plant Seeds

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GC-MS was performed on a QP5050A system (Shimadzu Corp., Kyoto, Japan) using an Equity-5 column (0.25 mm i.d. × 30 m, 0.25 μm film thickness; Supelco, Inc., Bellefonte, PA, USA). The HPLC consisted of a 626 pump with 996 photodiode array detector (Waters Corp., Milford, MA) equipped with a C-18 column (Inertsil ODS-3, 5 μm, 250 × 4.6 mm ID; GL Sciences, Inc., Tokyo, Japan). 1H and 13C NMR spectra were recorded with tetramethylsilane as the internal standard using JNM-EX270 (270 MHz) and JNM-LA500 (500 MHz) NMR spectrometers (JEOL Ltd., Tokyo, Japan). High resolution mass spectra were obtained with a JMS-T100LC AccuTOF mass spectrometer (JEOL). The seeds used in the present study have been previously described6 (link). They were planted at a depth of 5 mm in pots (8 × 8 × 6 cm deep) containing sand and then incubated in an illuminated growth chamber (FLI-301N; Tokyo, Rikakikai, Co., Ltd., Tokyo, Japan) under a 16-h light/8-h dark cycle at 22 °C.
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2

Characterization of (+)-PAO4 Compound

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ABA was a gift from Dr. Y. Kamuro and Toray Industries Inc., Tokyo, Japan. 1 H NMR spectra were recorded with tetramethylsilane as the internal standard using JEOLJNM-EX270 (270 MHz) and JNM-LA500 (500 MHz) NMR spectrometers (JEOL Ltd., Tokyo, Japan). 13 C NMR and 2D-correlation NMR experiments were recorded using a JNM-LA500 (500 MHz) NMR spectrometer (JEOL Ltd.). All peak assignments refer to the numbering in structure (+)-PAO4 (Fig. 1). High resolution mass spectra were obtained with a JEOL JMS-T100LC AccuTOF mass spectrometer (ESI-TOF, positive mode; JEOL Ltd.). Optical rotations were recorded with a Jasco DIP-1000 digital polarimeter. Circular dichroism spectra were recorded with a Jasco J-820 spectrophotometer. Column chromatography was performed using silica gel (Wakogel C-200, Wako Pure Chemical Industries, Ltd., Osaka, Japan).
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3

Characterization of Organic Compounds

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The melting points (uncorrected) were determined on a Fisher-Jhons apparatus (Fisher Scientific Company, Pittsburgh, PA, USA). The optical rotations were measured on a Perkin-Elmer 323 polarimeter (Perkin Elmer Inc., London, UK). The UV spectra were recorded on a Shimadzu UV 160U spectrophotometer (Shimadzu, Kyoto, Japan). VCD data were acquired on a BioTools dualPEM ChiralIR FT-VCD spectrophotometer (Jupiter, FL, USA). The IR spectra were obtained on a Bruker Tensor 27 spectrometer (Bruker, Ettlingen, Germany); 1D and 2D NMR experiments were performed on a Bruker Advance III HD spectrometer (Bruker Corporation, Billerica, MA, USA) at 700 MHz for 1H and 175 MHz for 13C. Chemical shifts were referred to CDCl3H = 7.26, δC = 77.16). The HR-DART-MS data were acquired on a Jeol, AccuTOF JMS-T100LC mass spectrometer (Jeol Ltd., Tokyo, Japan); silica gel 230–400 mesh (Macherey-Nagel, Macherey Nagel, Düren, Germany), Sephadex LH-20 (Pharmacia Biotech AB, Uppsala, Sweden), and octadecyl-functionalized silica gel (Sigma-Aldrich, St. Louis, MO, USA) were used for column chromatography. The X-ray data were collected on an Agilent Xcalibur Atlas Gemini diffractometer (Agilent Technologies, Oxfordshire, UK).
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4

Mass Spectrometry Analysis of Pitcher Fluids

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Pitcher fluids (yellow coloured) from prey captured N. khasiana pitchers (Fig. S5), chitin induced5 (link) (Fig. S6) and uninduced (colourless on opening, before prey capture) pitchers (Fig. S7) were collected, lyophilized and analyzed on an AccuTOF JMS-T100LC Mass Spectrometer having a DART (JEOL, MA, USA). Samples were analyzed directly in front of the DART source. Dry He was used at a flow rate of 4 L min−1 for ionization at 350 °C. Orifice 1 was set at 28 V, spectra were collected, and the data from 6–8 scans were averaged.
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5

Detailed Analytical Techniques for Compound Characterization

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Melting points were measured on a Fisher-Johns apparatus (Fisher Scientific Company, Pittsburgh, PA, USA) and are uncorrected. Optical rotations were measured on a 323 polarimeter (Perkin Elmer Inc., London, UK). Ultraviolet absorptions were recorded on a UV 160U spectrophotometer (Shimadzu, Kyoto, Japan). IR spectra were obtained on a Tensor 27 spectrometer (Bruker, Ettlingen, Germany). The 1D and 2D NMR experiments were performed on a Bruker Advance III spectrometer (Bruker) at 400 MHz for 1H and 100 MHz for 13C. Chemical shifts were referenced to TMS and J values are given in Hz. The HRDARTMS data were recorded on an AccuTOF JMS-T100LC mass spectrometer (Jeol Ltd., Tokyo, Japan). Prep TLC was carried out on precoated Sil G/UV254 plates (Macherey Nagel, Düren, Germany) of 1.0 mm thickness. Silica gel 230–400 mesh (Macherey-Nagel), Sephadex LH-20 (Pharmacia Biotech AB, Uppsala, Sweden) and octadecyl functionalized silica gel (Sigma Aldrich, St. Louis, MO, USA) were used for column chromatography. The X-ray data were collected on a D8 Venture κ-geometry diffractometer (Bruker).
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6

Isolation and Characterization of Phytochemicals

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Methanolic extract (25 g) was eluted through column chromatography packed with silica gel (60–100 mesh) using mobile phase of pure benzene, benzene and ethyl acetate (19:1; 9:1; 4:1; 1:1) and pure ethyl acetate. Successive fractions were subjected to TLC. The fractions having similar TLC profile were combined and re-chromatographed till the isolation of pure compound. The isolated phyto-constituents were identified and characterized by 1H (Bruker AVLL-400 MHz FTNMR) and 13C NMR (Bruker AVLL-400 MHz FTNMR) and MS (JEOL-AccuTOF JMS-T100LC Mass spectrometer) spectral analysis.
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