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11 protocols using dcfh da

1

Measuring Ferroptosis-Induced ROS Levels

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A total of 1×105 cells per well were seeded in six‐well plates one day prior to treatment with drugs. On the next day, cells were treated to induce ferroptosis; the treated cells were then harvested by trypsinization and resuspended in loading buffer containing DCFH‐DA(Dojindo) and incubated in a tissue culture incubator for 30 min. The cells were then washed twice with HBSS and resuspended in 200 µL of HBSS. ROS levels were analyzed using a BD FACS instrument in the FL1 channel, and data were analyzed using FlowJo.
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2

Cytotoxicity Evaluation of PC12 Cells

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PC12 rat pheochromocytoma cells were obtained from Shanghai Biochemistry Co., Ltd (Shanghai, China). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), RPMI-1640 medium, fetal bovine serum (FBS), penicillin and streptomycin, were obtained from Sigma Chemical Co. (St. Louis, MO, USA). 4-(2-Hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), acridine orange (AO) and ethidium bromide (EB) fluorescent dyes, 4′,6-damidino-2-phenylindole (DAPI) and TRIzol reagent were from Nanjing KeyGen Biotech Co. Ltd. (Nanjing, China). The reactive oxygen assay kit and DCFH-DA were provided by Dojindo Molecular Technologies, Inc. (Kumamoto, Japan). The Annexin V/propidium iodide (PI) apoptosis detection kit was obtained from Invitrogen Life Technologies, Inc. (Carlsbad, CA, USA).
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3

Evaluating ROS-Induced Oxidative Stress

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ROS play an essential role in cell-signaling pathways, whereas an increased amount of ROS is associated with oxidative stress and cell aging. After pre-treatment, the cultured media from untreated and treated cells were replaced with 2, 7-dichlorodihydrofluorescein diacetate or DCFH-DA (Dojindo Laboratories, Kumamoto, Japan) and left for 30 min. The cells were washed twice with Hanks’ balanced salt solution (HBSS) and then cultured with H2O2. The fluorescence signals were measured at λex = 505 nm, λem = 525 nm (Biotek Cytation 5 multi-mode reader, Santa Clara, CA, USA).
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4

Intracellular ROS Quantification Using DCFH-DA

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The level of intracellular ROS was detected using highly sensitive 2,7-dichlorofluorescein diacetate (DCFH-DA) (Dojindo). The loading buffer solution was prepared by diluting the loading buffer (10×) with ultrapure water 10 times. Highly sensitive DCFH-DA dye was diluted 1000 times with loading buffer solution to make a working solution. The subsequent procedures were similar to those mentioned above for cellular iron determination.
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5

Intracellular ROS Detection and Mitochondrial Measurement

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The Intracellular ROS levels were detected by DCFH-DA (Beyotime Biotechnology, S0033S). The Intracellular mitochondrial ROS levels were detected by Dihydrorhodamine 123 (MCE, HY-101894). Cells were cultured in six-well plates at a density of 2.0 × 105 cells/well. After being treated with l-sorbose, the cells were gently washed with D-PBS (BBI, E607009) followed by incubation with DCFH-DA or Dihydrorhodamine 123 at 37 °C for 30 min.
To obtain microscopy images, cells were seeded on a confocal dish overnight and treated with l-sorbose for 6 h. After being treated with l-sorbose, the cells were gently washed with D-PBS followed by incubation with MitoBright LT (Dojindo Laboratories, MT11) and DCFH-DA (Dojindo Laboratories, CK04) at 37 °C for 30 min, or Dihydrorhodamine 123 alone. Then the cells were washed with D-PBS twice. Images were obtained with a Nikon C2 Eclipse Ti-E inverted confocal microscope equipped with NIS-Element AR software.
To measure the volume of mitochondria, cells were cultured in six-well plates at a density of 2.0 × 105 cells/well. After being treated with l-sorbose, the cells were gently washed with D-PBS followed by incubation with MitoBright at 37 °C for 30 min. Then the cells were washed twice with D-PBS. The fluorescence of the cells was measured immediately on a FACSCalibur flow cytometer and analyzed by FlowJo software.
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6

Intracellular ROS Measurement in Sperm

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The levels of intracellular ROS were evaluated using the peroxide-sensitive fluorescent probe 2′7’-dichlorofluorescein diacetate (DCFH-DA) (Dojindo, Kumamoto, Japan). The sperm were exposed to a serum-free medium containing 10 μM DCFH-DA in the dark for 30 min and then washed thrice with cold PBS. Flow cytometry was used to measure the fluorescence intensity (FACS Calibur, Becton-Dickinson, Sunnyvale, CA).
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7

Investigating Donafenib's Anticancer Mechanisms

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Donafenib was provided by Suzhou Zelgen Biopharmaceuticals Co, Ltd.; GSK‐J4 (HY‐15648B), sorafenib (HY‐10201A), regorafenib (HY‐10331), Z‐VAD‐FMK (HY‐16658), necrosulfonamide‐1 (HY‐100573), 3‐MA (HY‐19312), hemin (HY‐19424), BSO(HY‐106376), Tocopherol(HY‐131553), DFO(HY‐B0988) and zinc protoporphyrin (ZnPP; HY‐101193) were purchased from MCE; Fer‐1 (S7243) was purchased from Selleck; CCK‐8(C0005) was purchased from Targetmol; Liperfluo(L248), MDA Assay Kit(M496) and DCFH‐DA(R253) was purchased from Dojindo; CellTiter‐Glo® 3D Cell Viability Assay was purchased from Promega(G9681), propidium iodide (PI) was purchased from Beyotime; and FeRhoNoxTM‐1(GC901) was purchased from Goryo. Antibodies against KDM6A (ab253183), GPC3 (ab207080), NRF2 (ab62352), H3K4me1 (ab8895) and H3K27ac (ab4729) were purchased from Abcam; antibody against HA‐tag (HT301) was purchased from TransGen Biotech, antibodies against HMOX1 (10701‐1‐AP) and Actin (66009‐1‐Ig) and were purchased from Proteingroup; and antibody against H3K27me3 (07‐449) was purchased from Sigma. ATAC kit (N248) and CUT&Tag kit (N259) were purchased from novoprotein.
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8

Intracellular ROS Measurement via DCFH-DA

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Intracellular ROS levels were measured using a photo-oxidation-resistant DCFH-DA assay according to the manufacturer's instructions (#R253, Dojindo, Japan). HeLa cells were harvested using the same method mentioned in “Annexin A5 Apoptosis Detection assay.” The harvested cells were then washed with fresh medium and incubated with DCFH-DA at a final concentration of 10 nM in the loading buffer provided in the kit. After incubation for 30 min at 37 °C, the cells were washed thrice with the medium. The ROS levels were analyzed using an RF-500 flow cytometer, and the data were analyzed using FCSalyzer 0.9.22 (https://sourceforge.net/projects/fcsalyzer/).
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9

ROS Measurement in Treated Cells

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The cells were seeded in 24‐well plates and after being treated with 9‐PAHSA or S‐9‐PAHSA (60 μM) for 24 h, the medium was removed and the cells were washed twice with PBS, followed by the addition of DCFH‐DA (Dojindo Laboratories, Japan) and incubation for 30 min in the dark at 37°C with 5% CO2. After culturing, the cells were washed three times with a serum‐free medium, followed by the addition of fresh medium and detection of the ROS level using a fluorescent microscope. The intensity of fluorescence was calculated using Image J (National Institutes of Health, USA).
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10

Quantifying Cellular and Mitochondrial ROS

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Two methods were used to determine ROS production. Mitochondrial ROS was determined with MitoSOX stain as we reported 25, 26 . To detect cellular ROS, cultured cells at 80% confluency were treated with DZ-SIM (5 μM) for 6 hours. The cells (1 × 10 7 ) were trypsinized and collected in 1 ml of fresh medium and were stained with diacetyldichlorofluorescein diacetate (DCFH-DA, Dojindo Laboratories, Rockville, MD, USA), with the manufacturer's recommended protocol. After being washed in phosphate buffered saline twice, the samples were subjected to flow cytometry on a Sony SA3800 spectral cell analyzer (Sony Biotechnology, San Jose, CA, USA).
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