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37 protocols using pyrocatechol

1

Laccase Enzyme Activity Optimization

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The effect of pH on the oxidation rates of various substrates was studied by measuring the enzyme activity in Britton & Robinson (B&R) buffers (pH 1.81–6.5). pH-optima for 2,2’-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS, Sigma, USA), pyrocatechol (Sigma, USA), 2,6-dimethoxyphenol (2,6-DMP, Sigma, USA), gallic acid (Sigma, USA) and syringaldazine (Sigma, USA) were measured using substrate concentrations of 1 mM for ABTS, 2,6-DMP, ferulic acid, sinapic acid and gallic acid, 5 mM for guaiacol, 10 mM for pyrocatechol and 0.042 mM for syringaldazine.
Temperature optima of the laccases were determined by using pyrocatechol as a substrate in 0.1 M Na-acetate buffer, pH 4.5. Enzymatic reaction rate was determined in the range of 25–80 °C using an integrated Peltier element (PerkinElmer, USA).
Thermal stability was measured after previous incubation of the enzyme in a concentration of 0.1 mg·ml-1 in 50 mM potassium phosphate buffer pH 6.5 at 60 and 70 °C, and residual activity was assayed with the pyrocatechol as a substrate.
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2

Antioxidant Activity Evaluation of Natural Compounds

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Methyl jasmonate, 2,2'‐azino‐bis(3‐ethylbenzothiazoline‐6‐sulphonic acid) (ABTS), HCl 37%, 2,4,6‐Tris (2‐pyridyl)‐s‐triazine (TPTZ), DPPH radical (diphenyl‐1‐picrylhydrazyl), (+)‐catechin, (−)‐epicatechin, quercetin 3‐O‐glucoside, and transresveratrol were obtained from Sigma‐Aldrich (US). L‐phenylalanine, 2‐methoxyphenol (Guaiacol), pyrocatechol, iron (III) chloride hexahydrate (FeCl3 (6H2O)), potassium persulfate (K₂S₂O₈), iron (II) sulfate heptahydrate (FeSO4 (7H2O)), sodium nitrite, Tween‐80, hydrogen peroxide 30%, Folin–Ciocalteu reagent, and polyvinylpolypyrrolidone (PVP) were purchased from Merck. Acetonitrile and rutin trihydrate were purchased from CHEMSOLUTE and Fluka, respectively. Trifluoroacetic acid (TFA) and methanol (all of HPLC grade) were obtained from VWR CHEMICALS. Milli‐Q water was acquired by SG water apparatus.
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3

Synthesis of Organic Compounds: A Comprehensive Approach

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Copper
nitrate trihydrate
(Merck-AR), sodium hydroxide (Merck-LR), poly(acrylic acid) (weight
average molecular weight MW ∼240000
by GPC, 25 wt % in H2O) (Sigma-Aldrich-AR), l-ascorbic
acid (S.D. Fine Chemicals-LR), sodium ascorbate (Merck-LR), propargyl
bromide (Merck-LR), 2-aminophenol (Merck-LR), 2-aminothiophenol (Merck-LR),
4-methylcinnamic acid (Merck-LR), 4-methyl benzaldehyde (Merck-LR),
phosphorus oxychloride (Merck-LR), pyrocatechol (Merck-LR), acetylene
(National Oxygen Limited), N-bromosuccinimide (NBS)
(S.D. Fine Chemicals-LR), benzoyl peroxide (Merck-LR), potassium carbonate
(Merck-LR), sodium bicarbonate (Merck-LR), sodium sulfate (Merck-LR),
dimethyl sulfoxide (DMSO( (Merck-AR), dimethylformamide (DMF) (Merck-AR),
tetrahydrofuran (THF) (Merck-LR), hexane (Merck-LR), acetone (S.D.
Fine Chemicals-AR), chloroform (CHCl3) (S.D. Fine Chemicals-AR),
tetrachloromethane (S.D. Fine Chemicals-AR), methanol (S.D. Fine Chemicals-AR),
ethanol (S.D. Fine Chemicals-AR), and double distilled water were
used.
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4

Antioxidant Capacity Evaluation of O. mutabilis

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Folin–Ciocalteu reagent, gallic acid (3,4,5-trihydroxybenzoic acid, abbreviated as GA), anhydrous sodium carbonate (Na2CO3), were obtained from Sigma-Aldrich (St. Louis, MO, USA). Reagents pyrocatechol, catechin, caffeic acid, epicatechin, p-coumaric acid, ferulic acid, and quercetin were of analytical grade and supplied from Merck (Darmstadt, Germany). The plant species O. mutabilis was collected in Mersin, Turkey, and identified by Dr. Riza Binzet (Location: C5 Mersin, Mersin-Gözne, around Darısekisi, rocky slopes and scrub area, 36°58′10.91″ N 34°34′11.79″ E, altitude of 780 m). Ultrapure water (18 MΩ cm at 25 °C) was provided by a Millipore Milli-Q Advantage A10.
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5

Phytochemical profiling of clove buds

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Dry clove buds (Indonesia) were purchased from a local market. Phloretin, ellagic acid, resveratrol, chlorogenic acid, cyanin chloride, coumarin, quercetin, tannic acid, resorcinol, pyrocatechol, pyrogallol, (-)-epicatechin, gallic acid, (-)-epigallocatechin gallate, rosmarinic acid, trans-ferulic acid, caffeic acid, 1,3,5-trihydroxybenzene dehydrate, salicylic acid, acetylsalicylic acid, (+)-abscisic acid, vanillin, pinoresinol, (+)-catechin and eugenol were HPLC analytical standards purchased from Merck (Milan, Italy). Tyrosol, hydroxyTyrosol, oleuropein, syringic acid, luteolin and apigenin were purchased from Extrasynthese (Cedex, France). Deionized water obtained with a Milli-Q system (Purelab Pro + Purelab Classic, Millipore, USA) was used as a solvent for all the extractions. Ethanol (EtOH for HPLC, ≥99,8%, Fluka), methanol (MeOH for HPLC ≥99%, Merck), dimethyl sulfoxide (DMSO for GC ≥99,5%, Merck), sodium hydroxide (NaOH 0.1 M, Merck) and formic acid (≈98%, Fluka) were used as solvents for the preparation of standards solution of polyphenols.
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6

Phytochemical profiling of clove buds

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Dry clove buds (Indonesia) were purchased from a local market. Phloretin, ellagic acid, resveratrol, chlorogenic acid, cyanin chloride, coumarin, quercetin, tannic acid, resorcinol, pyrocatechol, pyrogallol, (-)-epicatechin, gallic acid, (-)-epigallocatechin gallate, rosmarinic acid, trans-ferulic acid, caffeic acid, 1,3,5-trihydroxybenzene dehydrate, salicylic acid, acetylsalicylic acid, (+)-abscisic acid, vanillin, pinoresinol, (+)-catechin and eugenol were HPLC analytical standards purchased from Merck (Milan, Italy). Tyrosol, hydroxyTyrosol, oleuropein, syringic acid, luteolin and apigenin were purchased from Extrasynthese (Cedex, France). Deionized water obtained with a Milli-Q system (Purelab Pro + Purelab Classic, Millipore, USA) was used as a solvent for all the extractions. Ethanol (EtOH for HPLC, ≥99,8%, Fluka), methanol (MeOH for HPLC ≥99%, Merck), dimethyl sulfoxide (DMSO for GC ≥99,5%, Merck), sodium hydroxide (NaOH 0.1 M, Merck) and formic acid (≈98%, Fluka) were used as solvents for the preparation of standards solution of polyphenols.
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7

Protein Purification and Quantification

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Deionized (18.2 MΩ) filtered water (0.22 μm) came from a Milli-Q system, Millipore SAS (Molsheim, France). Methanol, Folin Ciocalteu's reagent, sodium carbonate, sodium bicarbonate, sodium sulfite, sodium chloride, sodium hydrogen phosphate, sodium dihydrogen phosphate, Dribulose 1,5-diphosphate carboxylase (Rubisco) from spinach, 1,4-dithioerythritol (DTE), HCl 37%, pyrocatechol, tyrosinase from mushroom, and gallic acid, were purchased from Sigma-Aldrich (Darmstadt, Germany). Sodium dodecyl sulfate (SDS), ethylenediaminetetraacetic acid (EDTA) and trisaminomethan (Trizma Base) from Merck (Germany), coomassie brilliant blue G-250 (Serva, Heidelberg, Germany), glycin (Applichem, Darmstadt, Germany), Precision Plus Protein Kaleidoscope Prestained Protein Standards (Bio-Rad), PageRuler Plus, and Criterion Tris-HCl gels were from Bio-Rad (Hercules, USA).
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8

Tamoxifen Signaling Pathway Analysis

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Tamoxifen was purchased from Nacalai Tesque (Tokyo, Japan). Caffeine, caffeic acid, chlorogenic acid, pyrocatechol, and trigonelline were purchased from Sigma-Aldrich (St. Louis, MO). LY294002 and U0126 were purchased from Tocris Bioscience (Bristol, UK). Anti-ERα, anti-phospho-MEK1/2 (S217/221), anti-MEK1/2, anti-phospho-ERK1/2 (T202/Y204), anti-ERK1/2, anti-phospho-Akt (S473), anti-Akt, and anti-cleaved caspase-3 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-p53, anti-cyclin D1, and anti-β-actin antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Peroxidase-conjugated rabbit anti-mouse, goat anti-rabbit, and swine anti-goat secondary antibodies were from Dako (Glostrup, Denmark).
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9

Phenolic and Flavonoid Profiling by HPLC

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The principal flavonoids and phenolic compounds were detected and identified using an Agilent 1260 series HPLC system with an Eclipse C18 column (4.6 mm × 250 mm i.d., 5 μm) and water (A) and 0.05% trifluoroacetic acid in acetonitrile (B) as the mobile phase at a flow rate of 1 ml/min. The mobile phase elution linear gradient was used as follows: 0 min (82% A:18% B); 0–5 min (80% A:20% B); 5–8 min (60% A:40% B); 8–12 min (60% A:40% B); and 12–20 min (82% A:18% B). The multi-wavelength detector used was monitored at a wavelength of 280 nm. The injection volume for each sample was 5 μl and the column temperature was maintained at 40°C. Each sample’s phenolic and flavonoid composition was determined by comparing their retention times and spectral reference data with the external standard controls. All standards, namely gallic acid, chlorogenic acid, catechin, methyl gallate, caffeic acid, syringic acid, pyrocatechol, rutin, ellagic acid, coumaric acid, vanillin, ferulic acid, naringenin, querectin, cinnamic acid, kaempferol, and hesperetin were purchased from Sigma-Aldrich (Khalil et al., 2020 (link); Abdel-Aziz et al., 2021 (link)).
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10

Comprehensive Phenolic Compound Analysis

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Gallic acid, (+)-catechin, pyrocatechol, chlorogenic acid, 2,5-dihydroxybenzoic acid, 4-hydroxybenzoic acid, (−)-epicatechin, caffeic acid, syringic acid, vanillin, taxifolin, sinapic acid, p-coumaric acid, ferulic acid, rosmarinic acid, 2-hydroxycinnamic acid, pinoresinol, quercetin, luteolin, and apigenin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Vanillic acid, 3-hydroxybenzoic acid, 3,4-dihydroxyphenylacetic acid, apigenin 7-glucoside, luteolin 7-glucoside, hesperidin, eriodictyol, and kaempferol were obtained from Fluka (St. Louis, MO, USA). Finally, verbascoside, protocatechuic acid, and hyperoside were purchased from HWI Analytik (Ruelzheim, Germany). Methanol and formic acid of HPLC grade were purchased from Sigma-Aldrich (St. Louis, MO, USA) and Merck (Darmstadt, Germany), respectively. Ultra-pure water (18 mΩ) was obtained from a Milli-Q water purification system (Millipore Co., Ltd.)
Ethyl acetate and methanol were obtained from Carlo Erba Reagents (Milan, Italy). Ultra-pure water was obtained using a Millipore Milli-Q Plus water treatment system (Millipore Bedford Corp., Bedford, MA). All chemicals were of analytical grade.
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