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Te2000 s

Manufactured by Nikon
Sourced in Japan, United States, Germany

The TE2000-S is a research-grade inverted microscope designed for advanced imaging applications. It features a sturdy, stable construction and is compatible with a wide range of accessories and modules to support various experimental setups. The TE2000-S provides high-quality optics and illumination to enable detailed examination of biological and materials science samples.

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171 protocols using te2000 s

1

Membrane Permeability and ROS Detection

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The cell membrane permeability was detected with fluorescent probe PI (propidium iodide) that can only enter membrane-compromised cells [31 ]. Fresh mycelia were harvested and incubated in 2 μM of PI for 20 min, and rinsed with distilled water for three times followed by the visualization with a fluorescence microscope (excitation 535 nm and emission 615 nm) (ECLIPSE, TE2000-S, Nikon).
Intracellular ROS was visualized using fluorescent probe DCFH-DA (2′,7′-dichlorofluorescein diacetate) described in our previous study [32 ]. Fresh mycelia were harvested and incubated in 1 μM of DCFH-DA for 20 min, and rinsed with distilled water for three times followed by the visualization with a fluorescent microscope (excitation 488 nm and emission 525 nm) (ECLIPSE, TE2000-S, Nikon).
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2

Tissue Preparation and Histological Staining

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After the collection of blood samples, animals were immediately transcardially perfused with 200 ml of 5 mM sodium phosphate-buffered 0.9% (w/v) saline (PBS, pH 7.2–7.4) and 4% paraformaldehyde in a phosphate buffer (0.1 M, pH 7.4). The major organs, including the brain, heart, lung, liver, kidney and spleen, were embedded in paraffin. Continuous 4 μm thick horizontal slices were obtained. For hematoxylin and eosin (HE) staining, the sections were dipped in hematoxylin for 3 min, washed in running tap water until the sections appeared blue to the naked eyes, and destained in hydrochloric acid alcohol for several seconds. The sections were washed again in running water for 10 min and dipped in eosin for 15 s prior to washing again for 5 min. They were subsequently dehydrated in an alcohol gradient, cleared in xylene, and coverslipped. For Nissl’s staining, the sections were dipped in 1% toluidine blue for 30 min at 45 °C, and differentiated in 75% alcohol for seconds, then rinsed quickly in distilled water. Digital images were acquired using an inverted microscope (TE2000-S, Nikon, Tokyo, Japan).
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3

Bacterial Viability Assay with BacLight

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BacLight Live/Dead Bacterial Viability Kit (Molecular Probes; Eugene, OR, USA) was used in the study (Huang et al., 2021 (link)). Live bacteria cells were stained with SYTO 9 to produce green fluorescence, and cells with compromised membranes were stained red by propidium iodide. The disks were examined using inverted epifluorescence microscope (TE2000-S; Nikon, Melville, NY, USA), and percent of live bacteria (%) was calculated by ImageJ software (ImageJ_v1.8.0; National Institutes of Health, USA). Percent of live bacteria (%) = live bacteria/(live bacteria + dead bacteria). Six replicates were tested for each group.
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4

Fixation and Embedding Protocol for TEM

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The procedures of TEM slice were described as previously123 (link),124 (link). Concisely, isolated sciatic nerves were fixed with 2.5% glutaraldehyde, post-fixed in 1% osmium tetroxide, dehydrated in acetone, and then embedded in EPON812 resin. Sliced into 500 nm, 37 °C dried. Toluidine blue stained for 1 min at 37 °C. Photos were taken with Nikon TE2000-S. The diameter of axons in sciatic nerves was measured by ImageJ software.
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5

Synchronization and Transfection of K562 Cells

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Before settling the cells onto Ad-SiMWS, K562 3.21 cells were first starved in serum-free RPMI medium in 75-cm2 cell culture flask for 10 hours to synchronize cells to G0/G1 phases of cell cycle (28 (link)) and then centrifuged to remove medium at the rate of 300g for 5 min. Approximately K562 3.21 cells (1 × 105 in 1.0 ml of serum-containing RPMI medium) were introduced into each well of an eight-well plate, where a 2.5 × 3 cm2 Ad-SiNWS was placed. Last, the Cas9•sgRNA⊂SMNPs (containing 3.0 μg of Cas9 protein) in 1.0 ml of serum-containing RPMI medium were added to each well. The cells were coincubated with SMNPs for a certain period. Every 48 hours, 1.0 ml of medium was removed via pipette and then a new 1.0 ml of serum-containing RPMI medium was added to each well. After washing with PBS, the cells in the well were immediately fixed with 2% paraformaldehyde (PFA) and then stained with DAPI. Microscopy-based image cytometry was used to detect the cellular uptake performances of different formulations. After each treatment, the GFP signal was quantified with a fluorescent microscope equipped with a charge-coupled device CCD camera (Nikon TE2000S, Japan).
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6

Measuring Cell Migration by Wound Healing Assay

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Wound healing assays were used to analyze the migratory ability of MDA-MB-231 cells transfected with Linc-OIP5 siRNA. A total of 3×105 cells per well were seeded into 24-well plates and cultured in DMEM with 1% FBS at 37°C in 5% CO2 for 48 h to allow the cells to adhere and form a confluent monolayer. Subsequently, the monolayers were scratched using the tip of a 10 µl pipette tip. The scratched wound was rinsed three times with PBS to remove debris. Cells were incubated at 37°C in 5% CO2 and monitored for 24 h. Wound healing was monitored by taking digital images from three different fields of view and from three independent samples at 0, 12, and 24 h after scratching. Scratch-wound images were captured using an inverted light microscope (TE2000-S; Nikon Corporation; magnification, ×40).
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7

Biofilm Viability Imaging Protocol

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Disks with 48 h or 72 h biofilms were washed twice with phosphate buffered saline (PBS), then stained with Live/Dead Baclight bacterial viability kits as previously described (Molecular Probes, Eugene, OR, USA) [32 , 34 (link)]. Briefly, 2.5 μM SYTO 9 and 2.5 μM propidium iodide were set on each sample for 15 min. Live bacteria were stained with SYTO 9 to emit a green fluorescence. Dead bacteria with compromised membrane were stained with propidium iodide to emit a red fluorescence. Images were captured with an inverted epifluorescence microscope (TE2000-S, Nikon, Melville, NY, USA). Three disks were used for each group and each disk was tested in five randomly-selected positions, yielding 15 images per group.
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8

Imaging Virus Internalization Dynamics

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Live cell imaging was performed on a confocal spinning disc microscope (PerkinElmer) with an inverted Nikon TE2000-S. Vero cells were grown inside iBidi treat 8-wells and incubated with F4-neoVSV-GPSUDV complex. Prior to this, F4 was directly labeled with the APEX antibody labeling kit (Alexa-Fluor 647) and tested for binding to neoGPSUDV. Recording of virus internalization and intracellular trafficking was started 10 min after exposure. Images of the two channels were recorded every 30 s.
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9

Immunofluorescence Imaging of Cell Markers

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Immunofluorescence was performed as described previously [45 (link)]. Cells were seeded into the 6-well culture plate (Corning Costar Corp) to prepare for performing cell immunofluorescence (IF). After incubating with primary antibodies, cells then incubated with corresponding fluorescence labeled secondary antibody. The slides were photographed using the inverted fluorescence microscope TE-2000S (Nikon, Tokyo, Japan). Primary antibodies for E-cadherin, vimentin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Rhodamine-conjugated phalloidin, DAPI and fluorescence labeled secondary antibody were obtained from Beyotime Institute of Biotechnology (Shanghai, China).
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10

Cell Migration Wound Closure Assay

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To measure cell migration, CRC and GC cells were plated into 35 mm dishes and cultured for 1 day. A scraped line was created with a 200 ul pipette tip once the cells nearly achieved 100% confluence. Then we replaced the medium and cultured the cells for 24 hrs. The speed of wound closure was imaged with an inverted microscope TE-2000S (Nikon) and the rate of closure was assessed.
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