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243 protocols using cuso4

1

Conditional Inhibition of ErbB Signaling

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We performed conditional inhibition of ErbB signaling using AG1478, a competitive kinase inhibitor that is routinely used in zebrafish to block this signaling pathway [37 (link), 44 (link), 59 (link), 60 (link)]. A final concentration of 5 μM AG1478 (Calbiochem, San Diego, CA, USA) in 0.05 % dimethyl sulfoxide (DMSO) was added to the E3 medium containing larvae from 10 hpf until 58 hpf to inhibit SC development. Alternatively, a final concentration of 5 μM of AG1478 in 0.05 % DMSO was added to embryos between 60 hpf and 144 hpf. This treatment allows SC development but blocks ErbB signaling from 12 h before electroablation until the end of the regeneration process.
For copper treatment, CuSO4 (Merck, Darmstadt, Germany) was dissolved in E3 medium and 72 hpf larvae were exposed to 100 μM CuSO4 for 2 h and subsequently rinsed a minimum of three times in fresh E3 medium.
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2

Optimizing Signal Acquisition for MRI

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Profiles for signal sensitivity vs. depth from the surface of the magnet were performed to determine the optimal frequency for signal acquisition. A PEEK holder was machined with a 1 mm × 16 mm × 32 mm pocket. The pocket was filled with 0.1 M CuSO4 (0.1 M, Sigma-Aldrich, St. Louis, MO, 1.02784), secured to a robotic arm, and positioned directly above the top of a surface RF coil placed on the center of the magnet array.
The sensitivity profile was performed by scanning the CuSO4 (0.1 M, Sigma-Aldrich, St. Louis, MO, 1.02784) sample along a perpendicular line at distances of 6-14 mm above the surface of the magnet in 1 mm increments. This process was repeated using B1 frequencies from 8.32–8.42 MHz in 0.01 MHz intervals.
Each scan was acquired with a Kea2 spectrometer (Magritek, Wellington, New Zealand) using a CPMG pulse sequence with 8192 echoes, 65 μs echo time, 12 μs pulse duration.
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3

Synthesis of ZnO Particles with Heavy Metal Dopants

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Zinc nitrate tetrahydrate (Zn(NO3)2.4H2O, Merck, 108833), hexamethylenetetramine (C6H12N4, Merck, 818712) and polyvinylpyrrolidone ((C6H9NO)n, Sigma-Aldrich, 81440) were used to synthesize ZnO particles. Heavy metal sources were nickel nitrate hexahydrate (Ni(NO3)2, Merck, 106721), lead nitrate (Pb(NO3)2, Fluka, 15335), copper sulfate (CuSO4, Merck, 102791), silver nitrate (AgNO3, Qrel, 55152), potassium dichromate (K2Cr2O7, C&L, 488), manganese (II) acetate tetrahydrate ((CH3COO)2Mn.4H2O, Merck, 843487), cadmium acetate (C4H10CdO6, Fisher, C4-500).
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4

Microbial Susceptibility to Heavy Metals

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Susceptibility toward copper (Cu), zinc (Zn), cadmium (Cd), and mercury (Hg) was tested, as previously described (Sharifi et al., 2015 ; Capps et al., 2020 (link)). Briefly, overnight cultures were spotted onto Mueller–Hinton agar (Oxoid) supplemented with different concentrations (0.05 to 40 mM) of ZnCl2 (Carlo Erba), HgCl2 (Sigma Aldrich), and CdSO4 (Sigma Aldrich) resuspended in distilled water, and CuSO4 (Merck Millipore) adjusted to pH 7.2 with 1 M NaOH. After 24 to 48 h of incubation at 37°C, the plates were visually inspected for bacterial growth on the spots.
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5

Cultivation of E. coli and S. cerevisiae

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E. coli was grown overnight at 37 °C, either in 2xYT liquid media (16.0 g tryptone, 10.0 g yeast extract, 5.0 g NaCl per 1 l of media) or on LB solid media (10.0 g tryptone, 5.0 g yeast extract, 5.0 g NaCl, 15.0 g agar per 1 l of media), supplemented with 100 mg/l ampicillin.
S. cerevisiae was grown at 30 °C/180 rpm in a chemically defined medium (6.70 g/l Difco Yeast nitrogen base without amino acids, 20.0 g/l glucose, 0.77 g/l MP Bio drop-out mixture, and 20.0 g/l agar for solid media). In the imaging experiments, Difco's YNB was replaced with Formedium's LoFlo YNB without amino acids, folic acid, and riboflavin (Formedium, Hunstanton, United Kingdom). In the experiments with copper, Difco's YNB was replaced with Formedium's YNB without amino acids and copper. Copper was supplemented as CuSO4 (Merck, Germany). Strains expressing ymNeongreen [38 (link)], QUEEN-2 m [39 (link)], and sfpHlourin [40 (link)] were grown in -his medium, while strain expressing copper biosensor [36 (link)] was grown in -ura medium.
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6

Cultivation of Pseudomonas putida KT2440

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The Pseudomonas putida strain KT2440 (Bagdasarian et al., 1981) (DSM‐6125, ATCC47054) was used in all experiments. Mineral salts medium (M12) (Vallon et al., 2013) was applied for the cultivations consisting of (per litre): 2.2 g (NH4)2SO4, 0.4 g MgSO4 × 7 H2O, 0.04 g CaCl2 × 2 H2O, 0.02 g NaCl, 2 g KH2PO4; and trace elements: 2 mg ZnSO4 × 7 H2O, 1 mg MnCl2 × 4 H2O, 15 mg Na3C6H5O7 × 2 H2O, 1 mg CuSO4 × 5 H2O, 0.02 mg NiCl2 × 6 H2O, 0.03 mg Na2MoO4 × 2 H2O, 0.3 mg H3BO3, 10 mg FeSO4 × 7 H2O (Merck, Darmstadt, Germany).
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7

Lipid Oxidation Protocol Optimization

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PAPC (850459C) and DPPC (850355) were purchased from Avanti Polar lipids and stored in chloroform at −80°C. POVPC (10031), KOdiAPC (62945), and PGPC (10044) were all purchased from Cayman Chemicals. Lipids were stored at 10 mg/ml in EtOH at −20°C. The lipids EC, PECPC, EI, PEIPC, 15d-PGJ2, and 15d-PGJ2PC were synthesized as described (Egger et al, 2013 (link), 2014 (link)). All lipids were stored at −80°C under nitrogen atmosphere. For experimental purposes, lipids were dissolved in DMSO to 20–50 mM in glass flasks (Carl Roth GmbH + Co) and then further diluted in pure RPMI-1640 medium before addition to cell suspensions. PAPC were oxidized by air exposure, with 5–10 μM iron(II)sulfate (Sigma, F8633-250G), or with 5–10 μM CuSO4 (Merck, 1.02790.0250) as oxidizing agents for various time intervals. Metal-catalyzed oxidation was performed in sterile PBS at 37°C in glass flasks using a rotary wheel set at 20 rpm/min.
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8

Porous Copper Deposition on Stainless Steel Mesh

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The SS mesh (SS316, 325 × 2,300, McMASTER-CARR) was cut into 0.2–1 cmgeo2 pieces and then spot welded with Cu wire (≥99.98%, Goodfellow) for electrical connection and used as WE. Two Pt mesh (1.5 cmgeo2, 99.9%, Goodfellow) electrodes were connected and used as a split CE. The WE was located in the middle of the two Pt meshes. Prior to electrodeposition, the WE was dipped in 0.06 M HCl (VWR Chemicals) and rinsed with Milli-Q water and ethanol. The electrolyte was made of 0.4 M CuSO4 (98%, Merck) in 1.5 M H2SO4 (99.999%, Sigma Aldrich). A constant current of −2 A with applied time ranging from 15 s to 7 min was set for the porous Cu deposition on SS mesh. The electrode was cleaned with Milli-Q water and ethanol several times and dried under vacuum after electrodeposition. The excess deposited Cu on the Cu wire and the edge of SS mesh were removed to keep the constant geometric area of the WE at different experimental conditions (Figure S29). All the WEs were stored in an Ar glovebox before use.
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9

Quantifying Nitric Oxide Levels

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NO levels were captured using the Apollo 1000 Free Radical Analyser and the NOPF100 NO microsensor (WPI). Data were recorded using Labscribe v3 (WPI) and analysed in Prism v6 (GraphPad) software. Before use, microsensors were polarised by immersing in copper (II) sulphate solution (0.1 M CuSO4, Merck Millipore) under continuous stirring. This provides a potential difference between the recording electrode relative to the reference electrode, which is amplified and recorded when NO is oxidised on the probe membrane. Polarising also provides a reduction in background current. The poise voltage on the Apollo 1000 was set to 865 mV, the current range was set at 10 nA and data were sampled at 10 Hz. The microsensor was left undisturbed for 2 h until a stable baseline was reached.
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10

Bistorta amplexicaulis root analysis

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Roots of Bistorta amplexicaulis plant was collected from Ghangachoti Bagh Azad Kashmir. Chemicals including AgNO3, NaNO3, KCl, CaCl2, SnCl2, BaCl2·2H2O, HgCl2, PbCl2, CuSO4, Mg(NO3)2, Ni(NO3)2·6H2O, AlCl3, and CuSO4·5H2O were purchased from chemical companies i.e., Merck or Sigma Aldrich and used without any further pretreatment. A calculated amount of AgNO3 and each metal salt were added in distilled water to prepare a stock solution.
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