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8 protocols using rabbit monoclonal anti gapdh

1

Immunoprecipitation and Acetylation Analysis of SOD1

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Immunoprecipitation of Flag-tagged SOD1 was carried out using anti-FLAG M2 beads. Equal amounts of proteins in lysis Buffer were used for precipitation. Input samples represent ~1% of protein amounts used for immunoprecipitation. The following antibodies were used for immunoprecipitation and followup immunoblotting: monoclonal rabbit anti-SOD1 (Epitomics); monoclonal rabbit anti-Sir2/SIRT1 (Epitomics); monoclonal mouse anti-acetylated-Lysine(Cell Signaling Technology); monoclonal mouse anti-P53 (Santa Cruz Biotechnology); monoclonal mouse anti-CCS (Santa Cruz Biotechnology); polyclonal mouse anti-FLAG M2 affinity Gel (Sigma); monoclonal mouse anti-DYKDDDDK-Tag (Abmart, Shanghai, China); monoclonal mouse anti-HA-tag (Abmart); monoclonal rabbit anti-GAPDH (Epitomics). Antibodies specifically recognizing acetylation at lysine 71 were prepared by PTM BioLab, Inc. (Hangzhou, China).
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2

Tissue Homogenization and Western Blot Analysis

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After removing the brain rapidly, the tissues were separated from the brain and then homogenized on ice with a microcontent motor-operated tissue homogenizer (Kimble knots, USA) in ice-cold lysis buffer (1×PBS, 1% Nonidet P-40, 0.5% sodium deoxycholate, and 0.1% SDS, RIPA) supplemented with protease inhibitors. Lysates were centrifuged at 10,000 × g for 20 min at 4°C, the supernatants were collected. Protein concentrations were determined by a Bradford protein assay. Equal amounts of protein (30µg) were separated by SDS-PAGE and electroblotted onto nitrocellulose filter (NC) membrane (Millipore). After non-specific antibody binding was blocked with 5% non-fat dry milk, membranes were incubated at 4°C overnight with polyclonal rabbit anti-TH (1:2000, Millipore, USA), polyclonal rabbit anti-α-synuclein (1:1000, Cayman Chemicals Company, USA), monoclonal rabbit anti-GAPDH (1:8000, Epitomics, USA). After washing in TBST, the immunoblots were incubated with horseradish peroxidaseconjugated secondary antibodies (Cell Signaling Technology) for 1h. The immunoblots were developed with an enhanced chemiluminescence (ECL) reagents (Millipore, USA), and measured with Quantity Software (Bio-Rad, CA). To compare protein loading, antibody directed against GAPDH was used.
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3

Investigating Protein Acetylation Mechanisms

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SirReal2 (Cat#: S7845) and EX527 (Cat#: S1541) were purchased from Selleck chemicals (Houston, TX, USA). Rabbit polyclonal anti-SIRT2 (Cat#: 19655-1-AP), mouse monoclonal anti-α-tubulin (Cat#: 66031-1-Ig), mouse monoclonal anti-acetylated tubulin (Lys40, Cat#: 66200-1-Ig) antibodies were purchased from Proteintech Group Inc. (Wuhan, China). Rabbit polyclonal anti-pFoxO3a (Phospho-Ser253; Cat#: 12199), and rabbit polyclonal anti-FIS1 (Cat#: 33067) antibodies were obtained from Signalway antibody LLC (College park, MD, USA). Rabbit polyclonal anti-TFAM (Cat#: OM108083), rabbit polyclonal anti-Mfn2 (Cat#: OM110904), rabbit polyclonal anti-DRP1 (Cat#: OM250563), and rabbit polyclonal anti-PCNA (Cat#: OM287574) antibodies were purchased from Omnimabs (Alhambra, CA, USA). Rabbit monoclonal anti-GAPDH (Cat#: ab181603), rabbit monoclonal anti-acetyl lysine (Cat#: ab190479), rabbit monoclonal anti-Histone H4 (acetyl K16; ab109463), and rabbit polyclonal anti-PCNA (Cat#: ab70315) antibodies were purchased from Abcam (cambridge, UK). Unless otherwise indicated, the other chemicals and media were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Western Blot Analysis of Osteogenic Markers

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The total protein was extracted from the cultured cells and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS PAGE) and transferred onto a PVDF membrane (Bio-rad, United States). The membrane was incubated with rabbit monoclonal anti-BMP2 (1:1000; Proteintech, United States), rabbit monoclonal anti-BMP4 (1:1000; Affinity Biosciences, United States), rabbit monoclonal anti-DMP1 (1:1000; Abcam, United Kingdom), rabbit monoclonal anti-ALP (1:1000; Abcam, United Kingdom), mouse monoclonal anti-RUNX2 (1:1000; Abcam, United Kingdom), rabbit monoclonal anti-TGFβ (1:1000; Abcam, United Kingdom), rabbit monoclonal anti-DSPP (1:1000; Affinity Biosciences, United States), rabbit monoclonal anti-MSX2 (1:1000; Bioss, CHN), and rabbit monoclonal anti-GAPDH (1:1000; Abcam, United Kingdom) overnight at 4°C. Proteins were visualized using HRP-conjugated donkey anti-rabbit IgG (1:20000; BBI Life Sciences) and HRP-conjugated donkey anti-mouse IgG (1:20000; BBI Life Sciences) secondary antibody. The membrane was scanned on an Odyssey V3.0 scanner (Li-cor).
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5

Western Blot Analysis of FAK, pFAK, and pAkt

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Lung tissues or cell pellets were lysed in RIPA buffer containing proteinase inhibitor. Equal amounts of protein (20 μg) were loaded on 8–10% SDS-PAGE gels and then electro-transferred onto PVDF membranes (Millipore Corp). The membranes were then blocked with BSA and incubated with the indicated primary antibody (1:3,000) overnight at 4 °C. Subsequently, the membranes were incubated with a secondary antibody (1:3,000, Abcam, anti-rabbit IgG). Then, the protein level on the blot was detected using the Western Bright ECL kit (Bio-Rad Laboratories). Equal loading of the samples was validated by the detection of GAPDH. The following antibodies against the target proteins in the study were used: rabbit monoclonal anti-FAK (Abcam), rabbit polyclonal anti-phospho-FAK (at Tyr397, Cell Signalling), mouse monoclonal anti-phosphated-Akt (at Ser 473, Santa cruz), and rabbit monoclonal anti-GAPDH (Abcam).
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6

Western Blot Analysis of Wnt7a in GC Cells

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RIPA lysis buffer containing proteinase inhibitors (Beyotime Institute of Biotechnology, Haimen, China) were used to extract total protein from the GC cells or tissues. Protein concentration was measured using BCA reagent kit (Beyotime Institute of Biotechnology). Total protein (50 µg) from each group was separated by SDS-PAGE. After electrophoresis, the proteins were transferred to an NC membrane (Millipore, Billerica, MA, USA). Skim milk (5–10%) was then used to block the membranes at room temperature for 2 h. Subsequently, the primary antibodies (rabbit polyclonal anti-Wnt7a, cat. no ab100792, 1:500; Abcam, Cambridge, UK; rabbit monoclonal anti-GAPDH, cat. .no. 5174, 1:2,000; Cell Signaling Technology, Inc., Danvers, MA, USA) were added to incubate the proteins at 4°C overnight and the goat anti-rabbit peroxidase-conjugated secondary antibodies (cat. no. ab205718, 1:2,000; Abcam) were added for 2 h at room temperature, respectively. Finally, the enhanced chemiluminescence kit (ECL; Millipore) was used to detect the signals. Densitometric analysis of bands was performed using ImageJ software (National Institutes of Health, Bethesda, MD, USA). GADPH served as a loading control.
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7

Western Blot Analysis of Protein Targets

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Cells were lysed in lysis buffer (Beyotime Biotechnology) that contained a phosphatase inhibitor cocktail. The supernatant was collected by centrifugation, and the protein concentration was determined with the BCA Protein Assay Kit (Beyotime Biotechnology). Equal amounts of total protein were loaded onto sodium dodecyl sulfate polyacrylamide (SDS-PAGE) gels and resolved by electrophoresis. The separated proteins were transferred to a polyvinylidene fluoride membrane followed by incubation with 5% non-fat milk solution for 1 h at room temperature. Next, the membrane was probed with primary antibodies against the target proteins at 4 °C overnight. The antibodies were rabbit polyclonal anti-SOX30 (Invitrogen; #PA5–40508), rabbit monoclonal anti-GAPDH (Abcam; #ab9485), and rabbit monoclonal anti-active β-catenin (Cell Signaling Technology; #19807). Subsequently, the membrane was incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG (Abcam; #ab205718) for 1 h at room temperature. Finally, an enhanced chemiluminescence kit (Millipore) was used to visualize the protein bands. Bands of interest were quantified using Image-Pro Plus 6.0 software.
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8

Western Blot Analysis of Mouse Retina Proteins

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Proteins of mouse retina tissue were extracted with a protein extraction solution assay kit (RAPI, Sigma). Nanodrop (Thermo) was used to measure protein concentration. Equal amounts of proteins were separated on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) resolving gel and 5% stacking gel and transferred onto polyvinylidene fluoride (PVDF) membranes. PVDF membranes were blocked with skim milk (BD) in Tris-buffered saline (TBS) for 1 h at room temperature. Following this, they were incubated with primary antibodies at 4 °C overnight (rabbit monoclonal anti-ZO-1, 1:500, Abcam; mouse monoclonal anti-RPE65, 1:500 Abcam; mouse polyclonal anti-Nestin, 1:500 Santa Cruz; rabbit monoclonal anti-α-SMA, 1:1000, Abcam; mouse polyclonal anti-CD68, 1:1000, Proteintech; rabbit anti-Bax, 1:1000, Abcam; rabbit monoclonal anti-GAPDH, 1:1000, Abcam). This was followed by PVDF membranes being washed with TBS-T (Tween 1:1000 dilution in TBS buffer) three times followed by incubation with secondary antibodies (HRP-goat anti-rabbit IgG, 1:2000, Bioss; HRP-goat anti-mouse IgG, 1:2000, Bioss) for 1 h at room temperature. After incubation, PVDF membranes were washed three times with PBS. Protein signals were detected with SuperSignal™ West Femto Maximum sensitivity substrate (Thermo Fisher Scientific) and imaged using the chemiluminescence system (Bio-Rad).
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