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42 protocols using bca kit

1

Quantitative Protein Expression Analysis

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Total protein was extracted from both the tissues and cells in strict accordance with the instructions of the efficient radio‐immunoprecipitation assay (RIPA) lysis buffer (R0010, Beijing Solarbio Life Sciences Co Ltd). Next, protein concentration was determined in each sample using a bicinchoninic acid (BCA) kit (20201ES76, Yeasen Biotechnology Co Ltd). Protein transfer onto a polyvinylidene fluoride (PVDF) membrane was performed following isolation by polyacrylamide gel electrophoresis (PAGE) and subsequently sealed with 5% BSA at room temperature for 1 hours. Incubation was subsequently conducted on the membrane with diluted primary rabbit anti‐human antibodies (Abcam Inc) to BTG2 (ab85051, 1:800), vascular endothelial growth factor (VEGF, ab39256, 1:1000), VEGF receptor (VEGFR, ab36844, 1:1000), matrix metalloproteinase‐2 (MMP‐2, ab37150, 1:1000) and MMP‐9 (ab73734, 1:1000) overnight at 4℃. The membrane was then further incubated with HRP‐labelled goat anti‐rabbit IgG diluent (ab205718, 1:20 000, Abcam Inc) at room temperature for 1 hours. ImageJ 1.48 u software (National Institutes of Health) was applied for protein quantitative analysis.
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2

Western Blot Quantification of cGAS and NF-κB Signaling

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Cells were collected at the specified times and washed twice with PBS. The cell extracts were prepared using lysis buffer and then centrifuged at 13,000 × g for 30 minutes at 4 °C. The protein concentration was quantified using a BCA kit (Yeasen, Shanghai, China). The supernatant was collected, and 5× SDS protein loading buffer was added in proportion, followed by incubation at 100 °C for 10 minutes. Proteins were separated on a 10–12% SDS‒PAGE gel and then electrophoretically transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Boston, MA). The membranes were blocked with 5% nonfat milk in Tris‐buffered saline supplemented with 0.1% Tween 20 at room temperature for 2 hours. The primary antibody was diluted with 1× TBST according to the instructions and incubated overnight at 4 °C. Subsequently, the membranes were incubated with secondary antibodies for another 2 hours at room temperature. Immunoblots were visualized using an enhanced chemiluminescence detection kit (Yeasen, Shanghai, China) with a chemiluminescence imaging analysis system (Tanon, Shanghai, China). Relative integrated density values were calculated using ImageJ software. The following antibodies were used: anti-cGAS, cGAS (E5V3W); rabbit mAb #79978 (CST, Boston, MA); anti-NF-κB, p65 (D14E12); XP® rabbit mAb #8242 (CST, Boston, MA); and GAPDH (Sigma‒Aldrich, Louis, MI).
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3

Quantitative Western Blot Analysis

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The total protein was extracted from tissues or cells with radioimmunoprecipitation assay lysis buffer (R0010, Solarbio), with the concentration determined by BCA Kit (20201ES76, YEASEN Biotech Co., Ltd., Shanghai). After separation by polyacrylamide gel electrophoresis, the protein was transferred to the PVDF membrane by wet transfer method. The membrane was sealed with 5% BSA at room temperature for 1 h, probed with the primary antibodies to CMTM7 (#PA5-103744, 1:1000, Thermo Fisher), EGFR (ab52894, 1:1000, Abcam), p-EGFR (ab40815, 1:1000, Abcam), AKT (ab8805, 1:500, Abcam), p-AKT (ab8933, 1:500, Abcam), VEGF (ab32152, 1:1000), CD63 (ab134045, 1:1000, Abcam), Hsp70 (ab181606, 1:1000, Abcam), TSG101 (ab125011, 1:2000, Abcam), and Calnexin (ab133615, 1:1000, Abcam) at 4 °C overnight. The next day, the membrane was re-probed with HRP labeled goat anti-rabbit IgG (ab205718, 1:10,000, Abcam) for 1 h at room temperature, developed by VILBER FUSION FX5 (VILBER LOURMAT, France). Image J 1.48u software (National Institutes of Health) was used for protein quantitative analysis, and the gray value of each protein was compared with the gray value of internal reference GAPDH.
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4

Western Blot Analysis of Gastric Proteins

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The total protein was extracted from mouse gastric mucosa tissues or cells using radio immunoprecipitation assay lysis (Beyotime). The protein concentration was estimated using BCA Kit (20201ES76, Yeasen Company, Shanghai, China). Subsequent to separation using sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels, the protein was electrotransferred onto a polyvinylidene fluoride membrane (IPVH85R, Millipore, Germany). Subsequent to 1-h 5% bovine serum albumin blocking, the membrane received overnight probing at 4 °C with the primary antibodies to AQP5 (PA5-97290, 1:1000, Invitrogen), β-catenin (Ab32572, 1:1000, Abcam), p-β-catenin (Ab246504, 1:1000, Abcam), and GAPDH (ab8245, 1:5000, Abcam) before 1-h re-probing incubated with HRP-labeled goat anti-rabbit IgG (ab6721, 1:5000, Abcam) or goat anti-mouse IgG (ab6789, 1:5000, Abcam) at ambient temperature. The membrane was developed with luminescent liquid. The protein was qualified using ImageJ software (National Institutes of Health) as normalized to internal reference (GAPDH).
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5

Protein Extraction and Western Blot Analysis

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The total tissue or cell proteins were lysed in RIPA lysate (R0010, Solarbio) in
strict accordance with the instructions, and then centrifuged at 4°C for 15 min.
Next, the lysates were quantified by a BCA kit (20201ES76, Yeasen Biotechnology
Co., Ltd., Shanghai, China). The protein sample was separated using freshly
prepared sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE),
electrotransferred onto PVDF membranes, blocked by 5% BSA for 1 h, and probed
with primary antibodies overnight at 4°C. Immunoblots were visualized with
HRP-conjugated secondary antibody IgG (ab205718, 1:10,000, Abcam) and enhanced
chemiluminescence detection reagents and captured under the Vilber FUSION FX5
(Vilber Lourmat, France). Gray value of target protein bands was quantified
using Image J software, with Actin used for normalization. Used primary
antibodies were TET1 (ab191698, 1:1000, Abcam), KLF4 (ab215036, 1:1000, Abcam),
CD63 (ab217345, 1:1000, Abcam), TSG101 (ab125011, 1:1000, Abcam), Calneixin
(ab92573, 1:1000, Abcam), and β-actin (ab179467, 1:1000, Abcam).
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6

Western Blot Analysis of PCV2 Infection

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PK15 cells were lysed with RIPA buffer supplemented with protease and phosphatase inhibitors for 15 min on ice, followed by centrifuge at 12,000 × g for 15 min at 4 °C. A bicinchoninic acid (BCA) kit (Yeason, China) was used for normalizing protein levels. After being boiled with 5 × loading buffer for 10 min, the quantified protein samples were loaded on 10% SDS-PAGE gel for electrophoresis, transferred to PVDF membranes (Immobilon, Germany), and then blocked with 5% skim milk at room temperature for 1 h, followed by incubation with relevant primary antibodies for detection [PCV2 Capsid; C1QTNF1, mTOR, HSP90, GAPDH (Proteintech, China); AKT, p-AKT, p-mTOR (Abmart, USA)] and then with secondary antibody [goat anti-rabbit IgG HRP, goat anti-mouse IgG HRP (Proteintech, China)]. Protein bands were visualized using ECL Reagent (Vazyme, China) and then exposed to the FluorChem FC3 system (Protein-Simple, USA). Finally, the relative integrated density of each band was digitized with the FluorChem FC3 system. GAPDH or HSP90 was used as an internal control.
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7

Protein Quantification and Western Blot Analysis

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The total protein content was extracted from cells after different treatment protocols using the radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime) before estimation of the protein concentration using a bicinchoninic acid (BCA) kit (20201ES76, Yeasen). Subsequent to separation by polyacrylamide gel electrophoresis, the protein was electro-blotted to a polyvinylidene fluoride membrane (IPVH85R, Millipore) by the wet transfer method, which subsequently underwent 1-h 5% bovine serum albumin sealing at ambient temperature. The membrane was probed with primary rabbit antibodies against NLRP3 (ab214185, 1: 1000, Abcam), Cleaved Caspase-1 (#4199, 1: 1000, CST, Danvers, MA, USA), mouse IL-1β (#12242, 1: 1000, CST), and β-actin (ab8226, 1: 3000, CST) overnight at 4 °C. The membrane was supplemented with the corresponding HRP-labeled goat anti-rabbit IgG (ab6721, 1: 5000, Abcam) or goat anti-mouse IgG (ab6789, 1: 5000, Abcam) for 1 h at ambient temperature. The membrane was supplemented with the luminescent solution prior to development. Protein quantitative analysis was implemented using the ImageJ software (National Institutes of Health, Bethesda, Maryland, USA), and the protein quantitative analysis was estimated as the ratio between the gray value of each protein and the gray ratio of the internal reference β-actin.
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8

Proteomic Analysis of A549 Cells

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A549 cells were seeded at a density of 2.0 × 106 cells/well in a 10 cm dish and incubated at 37℃ for 24 h to allow adherence. After that, the cells were either treated with G-Rh2 for 24 h or left untreated. Subsequently, the cells were lysed using RIPA buffer containing 1mM phenylmethanesulfonyl fluoride. The protein concentration was determined using a BCA kit (Yeasen, China). The protein was stored at -80℃ until further experiments. For total protein extraction, 250 µg of protein was obtained and then reduced with 10 mM DTT at 37℃ for 1 h. Subsequently, it was alkylated with 50 mM IAA at 25℃ in the dark for 1 h. Next, 1.5 mL of prechilled (-20℃) 100% acetone was added, and the samples were centrifuged at 14,000 g three times for 15 min to remove impurities. The samples were then diluted with 500 µL NH4HCO3. Peptides were desalted with SPE C18 cartridges (Thermo Fisher Scientific) and lyophilized under vacuum prior to nano-HPLC-MS/MS analyses. Three biological replicates were analyzed to evaluate the reliability of protein identification, reproducibility, and accuracy.
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9

Quantification of Protein Expression

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The total protein was extracted from cells using RIPA lysis (Beyotime Biotechnology, Shanghai, China) containing PMSF (Thermo Fisher Scientific), and the protein concentration was determined using the BCA kit (20201ES76, Yeasen Biotechnology Co., Ltd., Shanghai, China). Quantification was performed according to different concentrations, and the protein was transferred onto a PVDF membrane (Millipore, Billerica, MA) through polyacrylamide gel electrophoresis. The membrane was blocked in 5% bovine serum albumin for 1 h at room temperature and incubated with primary antibodies against RUVBL1 (ab51500, 1: 100, Abcam, Cambridge, UK), CTNNB1 (ab273712, 1: 1000, Abcam), CDK2 (ab32147, 1: 1000, Abcam), CCND1 (ab16663, 1: 200, Abcam) at 4 °C overnight. The membrane was re-probed with horseradish peroxidase-labeled goat anti-rabbit IgG (ab6721, 1: 5000, Abcam) or goat anti-mouse IgG (ab6789, 1: 5000, Abcam) for 1 h at room temperature. The luminescent solution was added for development. Protein quantification analysis was performed by ImageJ software (National Institutes of Health) as normalized to GAPDH.
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10

Protein Extraction and Western Blot Analysis

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Tissue extracts and whole cell lysates were prepared in immunoprecipitation assay buffer (50 mM Tris, pH 8.0, 50 mM KCl, 2 mM CaCl2, 3 mM Na3VO4, 2 mM NaF, 20% glycerol, 0.5% Lubrol-px, and 0. 1% cocktail), the protein concentration was determined by a bicinchoninic acid (BCA) kit (Yeasen, Shanghai), then the total protein of 30 ~ 50 μg of each sample was used for polyacrylamide gel electrophoresis and transferred to nitrocellulose membrane (Pall Corporation, USA) in Tris-glycine buffer containing 20% methanol. The membranes were blocked in 5% nonfat milk and incubated with diluted primary antibodies at 4 °C overnight, followed by incubation with HRP-conjugated goat anti-rabbit or anti-mouse secondary antibodies, immune complexes were detected using ECL chemiluminescence hypersensitive chromogenic kit (Pierce, USA).
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