The largest database of trusted experimental protocols

15 protocols using model 5973

1

Quantifying Amino Acids in Floral Nectar

Check if the same lab product or an alternative is used in the 5 most similar protocols
Analysis of amino acids was performed using the Phenomenex EZ:Faast kit for free amino acids (www.phenomenex.com). Six replicate samples for each nectar type were collected as described previously. Due to low volume of nectar produced by the foliar nectary, these nectar samples were pooled from a maximum of 90 nectaries, collected from six separate plants. Each sample (20 µL nectar per extraction) was subjected to solid phase extraction and derivatized according to the manufacturer’s instructions, with one adjustment: after addition of the norvaline internal standard (5 nmol) to each sample, 125 µL of 10% propanol (v/v)/20 mM HCl was added to acidify the sample. Following derivatization, samples were concentrated by evaporation under a stream of nitrogen gas before amino acids were analyzed using an Agilent Technologies model 6890 gas chromatograph with a ZB-AAA 10 m × 0.25 mm amino acid analysis column coupled to a model 5973 mass selective detector capable of electrical ionization (EI). The GC–MS instrument settings followed the manufacturer’s recommendations.
+ Open protocol
+ Expand
2

Analysis of Lipid Profiles in K. olearia

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total lipids were extracted from K. olearia grown at 40 °C to early stationary phase and 65 °C to mid-log, early stationary, late stationary and death phase using methanol–chloroform (1:1 v/v). Fatty acid methyl esters (FAME) were prepared from total lipids extracts using mild alkaline methanolysis (Guckert et al. 1985 (link)). Dried FAME samples were re-dissolved in 300 µL chloroform (HPLC grade, Fisher Scientific) and analyzed by gas chromatography with mass spectrometry (GC–MS) on an Agilent 6890N gas chromatograph with a model 5973 inert mass selective detector (Agilent) fitted with an Agilent HP-5MS capillary column (30 m × 0.25 mm ID, 0.25 µm film thickness; J + W Scientific). Helium was used as the carrier gas with a temperature program of 130 °C increasing at 3 °C min−1 to 290 °C and held for 2 min. Sample peaks were identified by comparison to Bacterial Acid Methyl Ester Mix standards (Supelco, Sigma Aldrich) or on the basis of mass spectra and expressed as a percentage of the total FAME quantified in each sample.
+ Open protocol
+ Expand
3

GC-MS Analysis of Synthetic 2AP and Byproducts

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Model 6850 gas chromatograph equipped with a Model 5973 mass spectrometer with dimensions of 30 m × 0.25 mm and a 0.25-μm nonpolar capillary column HP-5MS (5%-phenyl)-methylpolysiloxane (Agilent Technologies, Santa Clara, CA, USA) was used to analyze the synthetic 2AP, including its intermediate, byproducts and reaction product with Cr(CO)6. The GC carrier gas used was purified helium (99.99%) at a constant flow rate of 1 mL min1. The oven temperature was initially held at 45 °C and then increased at a rate of 3 °C min1 to a final temperature of 150 °C. To analyze the rice sample extracts, the initial oven temperature was set at 45 °C, held for 5 min and increased to 200 °C at a rate of 4 °C min1. The injector temperature was 230 °C. The sample was injected with a split ratio of 10:1. The mass spectrometer was operated in electron impact (EI) mode with an electron energy of 70 eV. The ion source and quadrupole temperatures were set at 230 °C and 150 °C, respectively. The mass range (m/z) was 29–550 with a scan rate of 0.68 s. The GC–MS transfer line was set to 280 °C. 2AP and Cr(CO)6 were identified by matching their mass spectra with synthetic and standard compound reference spectra in the Wiley 7n Mass Spectral Library (Revision C.00.00). The NIST 17 Mass Spectral Library (Revision D.01.00/1.6d.) was also utilized.
+ Open protocol
+ Expand
4

Analysis of Serevenia buxifolia Leaf EO by GC/MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
The EO of Serevenia buxifolia leaves was analyzed by GC/MS, as described by Liu et al. (2014 (link)).
The components of the EO were separated by GC and identified by MS using an Agilent GC 6890 equipped with an HP‐5MS (5%‐Phenylmethylpolysiloxane) fused silica column (30 m × 0.25 mm × 0.25 μm) interfaced with a quadrupole detector (Model 5973). The GC settings were as follows: the initial oven temperature was held at 50°C for 2 min and ramped at 2°C/min to 80°C, then ramped at 5°C/min to 150°C, where it was held for 5 min, before being ramped at 10°C/min to 200°C and then at 20°C/min to 300°C, where it was held for 10 min. The sample (1 μL diluted 1:100 in hexane) was injected, with a split ratio of 1:50. The carrier gas was helium, at a flow rate of 1 mL/min. Spectra were obtained over the scan range from 20 to 500 m/z at 2 scans/s.
+ Open protocol
+ Expand
5

Identification of Essential Oil Constituents

Check if the same lab product or an alternative is used in the 5 most similar protocols
After examining the spectrum data and retention indices of the eluted compounds, the constituents in the essential oil were identified using gas chromatography–mass spectrometry(GC/MS).The coupling was carried out using a device (GC-MS), MS of the Agilent Technologies 5973 type Brand Agilent Technologies Model 5973 with an Agilent column 19091S-433 HP-5MS, 30 m long, 0.25 mm inside diameter, and 0.25 μm film thickness of the stationary phase
Helium was employed as the carrier in the experiment, with a pressure range (psi) of 0.9 mL/s. The temperatures of the injector and detector were adjusted at 250 °C and 260 °C, respectively. The oven temperature was set between 60 and 300 degrees Celsius at a rate of 10 degrees Celsius per minute, and then kept at 300 degrees Celsius for 20 min.
+ Open protocol
+ Expand
6

GC-MS Analysis of Volatile Sulfur Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
The GC-MS instrumentation used consisted of an Agilent Model 6890 chromatograph, Agilent Model 7683 injector, and Agilent Model 5973 mass selective detector. The GC column was an Agilent HP-5MS, 30 m × 0.25 mm with 0.25 µm film. We used Agilent ChemStation Version D.01.02.16 software to process the data. Chromatography analysis was conducted at 45 °C for 3 min, 3 °C/min to 250 °C, and 250 °C for 5 min with an He flow rate of 1 ml/min. The inlet temperature was 250 °C, and the injection volume was 1 µl for liquid samples and 10 µl for headspace samples. The MS parameters were as follows: source temperature 230 °C, quadrupole temperature 150 °C, and scan range of 45–400 m/z. The ions used for quantification included 94 m/z (DMDS) and 126 m/z (DMTS).
+ Open protocol
+ Expand
7

Amino Acid Analysis of Nectar

Check if the same lab product or an alternative is used in the 5 most similar protocols
Analysis of amino acids was performed using the Phenomenex EZ:FaastTM kit for free amino acids (Torrance, CA, United States). Each sample (60 μL nectar per extraction) consisted of nectar pooled from four individual flowers. Six replications were analyzed for each sex. Sample preparation from solid phase extraction to derivatization were completed according to the manufacturer with one adjustment: after addition of the norvaline internal standard to each sample, 125 μL of 10% propanol/20 mM HCl was added to acidify the sample. Following derivatization, samples were concentrated under a stream of nitrogen gas before amino acids were analyzed using an Agilent Technologies model 6890 gas chromatograph coupled to a model 5973 mass selective detector capable of electrical ionization (EI). The GC-MS instrument settings followed the manufacturer’s recommendations.
+ Open protocol
+ Expand
8

Phytochemical Profiling Using GC-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to Kabran’s approach [42 ], the phytochemical components were identified using the silylation method. Separated, dried on anhydrous MgSO4, and then concentrated under vacuum, the organic fractions were processed. Then, after being heated at 37 °C for 30 min, 3 mg of the resulting fraction was combined with 200 L of N-methyl-N-trimethylsilyltrifluoroacetamide (MSTFA). The samples were then analyzed using a gas chromatograph connected to a mass spectrophotometer (GC-MS; Agilent Technologies Model 5973 with an Agilent column 19091S-433 HP-5MS equipped with a single quadrupole mass spectrometer, operated using electron ionization (EI)) to determine the composition of 0.1 L of the samples (Agilent Technolo-gies, Santa Clara, CA, USA). Helium served as the carrier gas and had an average pressure range (psi) of 0.9 mL/s. The oven was set to a temperature range of 60 to 300 °C. The retention time of the silylated compounds was compared with those of the standards acquired from the database to identify them.
+ Open protocol
+ Expand
9

Isolation and Characterization of ADTA

Check if the same lab product or an alternative is used in the 5 most similar protocols
The isolation of ADTA was carried out as described previously (Martínez et al. 1994 ). Briefly, dried and ground aerial parts of G. glutinosum were successively extracted at room temperature with hexane. The extract was concentrated in vacuo. The purity and the structure of the compound were determined by using NMR spectroscopy and chromatographic methods, respectively. Briefly, 1 mg of ADTA was dissolved in 1 mL of iso-octane, and the purity was performed using a gas chromatograph (Agilent 6890N Technology) coupled to a selective mass detector (Model 5973). Then, 0.4 μL of sample was injected into the injection port at 300 °C. For separation of the sample, a capillary column (DB-5HT, 15 m long, 0.25 mm intern diameter, and 0.10 μm of particle size) was used. The temperature program in the oven was 50 °C for 3 min, increasing 15 °C/min until 300 °C for 2 min. The spectra were collected at 71 eV of ionization voltage and the range of analyzed mass was 33800 m/z. Finally, ADTA was identified by its mass spectrum and its purity was determined based on the area under the curve of all peaks present in the chromatogram. The purity of the compound was 98.5%. The yield was 0.125% dry weight.
+ Open protocol
+ Expand
10

Comprehensive Metabolic Analysis of Muscle Physiology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood samples were collected in pre-chilled heparinized tubes (Becton Dickinson Vacutainer system, Franklin Lakes, New Jersey, USA) and kept on ice to minimize enzymatic reactions. All plasma samples were stored at -80°C until further analyses. Muscle samples were prepared and processed as previously described [23 (link)].
Muscle free intracellular, protein-bound, and plasma L-[ring-13C6]-phenylalanine enrichments were determined using the tert-butyldimethylsilyl derivative and GCMS (Agilent Technologies model 5973) with electron impact ionization as described previously [23 (link)]. Glucose concentrations were measured using an YSI glucose auto-analyzer. Amino acid concentrations in plasma were measured by liquid chromatography-mass spectrometry using the internal standard approach for each individual amino acid, as previously described [23 (link)]. Serum CRP and insulin concentrations were measured by ELISA. Serum albumin and pre-albumin were analyzed using validated methods.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!