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5 protocols using glomax discover multimode detection system

1

NER, ICL Repair, and XPF/XPG Variants

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Analyses of NER, as well as ICL repair capacity and complementation with WT full-length XPF or XPG, as well as the respective splice variants was assessed via HCR performed according to the descriptions in Lehmann et al. [14 (link)] after 48 h for XPF in immortalized MRC5Vi cells and 72 h for XPG in primary patients or WT fibroblasts. Liposomal transient transfections were carried out in a 24-well format (Greiner Bio-One, Kremsmünster, AUT) using Attractene transfection reagent (Qiagen, Hilden, DE) according to the manufacturer’s instructions. Unirradiated Renilla luciferase was used for normalization. Luminescence was measured 48 h or 72 h after transfection with the GloMax® Discover Multimode Detection System (Promega). The relative repair capability [%] was calculated as the quotient of treated cells to untreated firefly/Renilla ratios. Cells were treated with either UVC (750–1000J/m2), with diammineplatinum(II) dichloride (CP) (Sigma-Aldrich, Munich, DE) in a molecular ratio of 1:20 or 1:40 (vector:CP) or with 4,5’,8-trimethylpsoralen (TMP) (Sigma Aldrich, Munich, DE) (1:25 (primary cells) or 1:50 (immortalized cells) (vector:TMP)) followed by irradiation with 1 J/cm2 UVA. A batch treatment of plasmids was done and used for all respective experiments. The assay was repeated at least four times in triplicates.
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2

Measuring Thermogenic Capacity in Adipocytes

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Differentiated adipocytes were incubated in FBS-free DMEM mixed with 250 nM thermosensitive fluorescent ERthermAC dye for 30–45 min at 37 °C [34 (link)]. Media were replaced with fresh 90 μL DMEM/H without phenol red prior to imaging. Fluorescence in the stained cells was detected via a GloMax Discover Multimode Detection System (Promega, Madison, WI, USA) using 520 nm excitation and emission at 580–640 nm. The temperature inside the machine was equilibrated at 25 °C. After measuring 3 points of basal fluorescence, 10 μL forskolin (final concentration: 10 μM; F6886, Millipore Sigma, Burlington, MA, USA) was added to initiate thermogenesis. Fluorescence was recorded every 5 min over 120 min. Results were interpreted as relative intensity (normalized to basal measurements). The fluorescent intensity of the ERthermAC dye is inversely correlated with intracellular temperature. The area above the curve was quantified to show the thermogenic capacity in response to forskolin.
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3

Cell Viability and Apoptosis Assay

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Cell viability was detected with Cell Counting Kit-8 (CCK-8; Dojindo Molecular Technologies, Kumamoto, Japan) according to the manufacturer’s instruction. Absorbance was measured at 450 nm using a GloMax Discover Multimode Detection System (Promega, Madison, WI). SC viability (%) was calculated using the following formula: (absorbanceoftreatmentgroupabsorbanceofblank)/(absorbanceofcontrolgroupabsorbanceofblank)×100%
The live-cell growth status was recorded by photography using an IncuCyte Zoom System (Essen BioScience, Inc., Ann Arbor, MI).
Cell apoptosis was evaluated using annexin V/propidium iodide (PI) staining. SCs were washed with ice-cold phosphate buffered saline (PBS), centrifuged (100 × g) for 5 min at 4 °C, resuspended in 1× binding buffer of an Annexin V-fluorescein isothiocyanate Apoptosis Detection Kit (BD Biosciences, San Joes, CA). Five microliters of fluorescein isothiocyanate-labelled annexin V and 5 µl of PI were added to a 490 µl suspension and were gently mixed. After incubation at 25 °C for 15 min in the dark, SCs were analyzed using BD AccuriTM C6 Flow Cytometer (BD Biosciences).
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4

Intracellular ROS and Mitochondrial Superoxide Analysis

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Intracellular ROS production was detected using DCFDA dye (Sigma-Aldrich), and MitoSOX Red (Thermo Fisher Scientific) was used for mitochondrial superoxide detection. SCs were separately stained with 15 µM DCFDA for 15 min and 5 µM MitoSOX Red for 10 min at 37 °C, followed by staining with 1 µg/ml of DAPI (Sigma-Aldrich) for 10 min. Fluorescence images of SCs were taken using a fluorescence microscope (Olympus IX70) at 492 nm excitation/520 nm emission for DCFDA, 510 nm /580 nm for MitoSOX Red, and 340 nm /488 nm for DAPI. Fluorescence intensities were analyzed using ImageJ.
SCs were assayed for MDA, SOD, CAT, and GPx levels using kits from Sigma-Aldrich and BioVision (Milpitas, CA) following the manufacturer’s instructions. Total ROS level was measured using the OxiSelect In Vitro ROS/RNS Assay Kit (Cell Biolabs, San Diego, CA). The fluorescence intensity of 2’,7’-dichlorodihydrofluorescein (DCF) is proportional to the total ROS level within the sample. The optical densities were measured using the GloMax Discover Multimode Detection System (Promega). Units of MDA (nmole/mg protein), SOD and CAT (U/mg protein), GPx level (mU/mg protein), and ROS (nmole DCF/mg protein) were expressed.
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5

EnvZ Autophosphorylation Kinetics Assay

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Autophosphorylation by EnvZ was measured using the in vitro ADP-Glo™ Kinase assay (Promega,
Madison, WI), which quantifies the amount of ADP formed as a product in a kinase reaction using a luminescence-based detection
method (Zegzouti et al., 2009 (link)). All reactions were carried out following
manufacturer’s recommendations and were performed at least in duplicates. Kinase reactions were performed for the
following EnvZc samples: (1) Wild-type (WT) (2) D244A (3) A239T and (4) T247R under both low and high osmolality conditions.
The protein samples were diluted to a final concentration of 5 μM EnvZ in the low osmolality buffer containing 20 mM
Tris-HCl, 2 mM MgCl2, 100 μM ATP, pH 7.6 to a final volume of 10 μL. The high osmolality buffer
additionally contained a final concentration of 20% sucrose. Luminescence recordings were taken in a Glomax®Discover Multimode Detection System (Promega, Madison, WI). Amount of ADP produced was calculated based on standard curves
constructed according to the manufacturer’s recommendations. Enzyme activity is represented as micromoles of ADP
produced per milligrams of enzyme per minute (Figure 4C).
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