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5 protocols using live dead blue stain

1

Flow Cytometric Analysis of Immune Cells

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Single-cell suspensions were stained with a fixable live/dead blue stain (Cat #: L23105, Invitrogen) and the antibodies against human CD45-PerCP (Cat #: 304026, Biolegend), CD8-APC (Cat #: 980904, Biolegend) or FLAG tag-PE (Cat #: 637310, Biolegend) in FACS buffer that containing 2% FBS in PBS. Data were collected on LSRFortessa (BD Biosciences) and analyzed using FlowJo software V10.
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2

Metabolic Profiling of Activated γδ T Cells

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For γδ T cell proliferation, cells were labeled with 2.5 μM CFSE (Molecular Probes) at 37°C for 7 min. Cells were seeded in a 96-well plate pre-coated with anti-CD3ε and anti-CD28. After incubation at 37°C for 48h, cells were stained with Live/Dead Blue Stain (Invitrogen) before being analyzed by flow cytometry for CFSE dilution. When indicated 15 U ml-1 rIL-2 (R&D Systems) or 10 mM L-NMMA (Calbiochem), 0.5 mM N6-(1-iminoethyl)-l-lysine dihydrochloride (L-NIL, Calbiochem) were added to the cultures.
For metabolic assays, γδ T cells were sorted from WT and Nos2KO mice and cultured for 4 days in 0.1 μg ml-1 anti-CD3ε, 10 μg ml-1 anti-CD28, 15 μg ml-1 rIL-7 and 15 U ml-1 rIL-2. Metabolism analyses were performed directly or after 18h of resting followed by 4h of stimulation in media containing 5 mM L-NMMA and or 15 U ml-1 rIL-2 when indicated. 5.105 cells per well were plated in Seahorse plates coated with CellTak (Corning). The OCR and ECAR were measured in XF medium (unbuffered RPMI containing 2 mM glutamine, pH 7.4) under basal conditions and in response to glucose (25 mM), oligomycin (1 μM), FCCP (1.5 M) plus pyruvate (1 mM) and antimycin A (1 μM) plus rotenone (0.1 μM) with an XF-24 Extracellular Flux Analyzer (Seahorse Bioscience). Rate of glycolysis was defined as the difference between ECAR following the injection of glucose and the basal ECAR reading.
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3

Multiparameter Flow Cytometry Analysis

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Surface staining was performed by incubating cells on ice, for 20 min, with saturating concentrations of labeled Abs in PBS, 5% FCS and 0.5% EDTA. Mouse cell-staining reactions were preceded by a 15-min incubation with purified anti-CD16/32 Abs (FcγRII/III block; 2.4G2) obtained from hybridoma supernatants. Intracellular cytokine staining were performed after stimulation of single cell suspensions with Phorbol 12-myristate 13-acetate (PMA) (50 ng ml-1) (Sigma), ionomycin (0.5 μg ml-1) (Sigma) and 1 μL ml-1 Golgi Plug (BD Biosciences) for 4h at 37°C 5% CO2. Cells were incubated with Live/Dead Blue stain (Invitrogen), according to the manufacturer protocol prior to Ab surface staining. Then, intracellular staining was performed using Cytofix/Cytoperm kit (BD biosciences) following the manufacturer’s instructions. γδ T cell apoptosis were assessed ex vivo by staining pLNs for FITC-conjugated annexin V (BioLegend) according to the manufacturer’s instructions. Data files were acquired and analyzed on LSRII using Diva software (BD Biosciences).
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4

SARS-CoV-2 Nucleocapsid Protein Detection

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H1299-E3 cells were plated at 60,000 cells per well in 6-well plates (Corning) 1 day pre-infection. The next day the cells were infected at 1000 focus-forming units in 1 ml growth media per well. Cell–virus mixtures were incubated for 1 h at 37°C, 5 per cent CO2 then an additional 1 ml of growth media was added. Twenty-four hours post-infection, cells were trypsinized (Sigma-Aldrich), collected, and stained with Blue Live/Dead stain as per manufacturer instructions (L34961, ThermosScientific). The samples were then washed in 1 ml PBS−/− and resuspended in Cytofix/Cytoperm (BD Biosciences) for 20 min at 4˚C in the dark. The samples were then stained with 0.5 μg/ml anti-SARS-CoV-2 nucleocapsid-PE (ab283244, Abcam) for 1 h at 4˚C in the dark. Cells were analysed on an Aria Fusion (BD). Data were analyzed using FlowJo and Graphpad Prism 9.4.1 software.
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5

Quantifying SARS-CoV-2 Infection in H1299 Cells

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H1299-E3 cells were plated at 60,000 cells per well in 6-well plates (Corning) 1 day pre-infection. The next day the cells were infected at 1000 focus-forming units in 1 mL growth media per well. Cell–virus mixtures were incubated for 1 h at 37 °C, 5% CO2 then an additional 1 mL of growth media was added. 24 hours post-infection, cells were trypsinised (Sigma-Aldrich), collected and stained with Blue Live/Dead stain as per manufacturer instructions (L34961, ThermosScientific). The samples were then washed in 1 mL PBS−/− and resuspended in Cytofix/Cytoperm (BD Biosciences) for 20 min at 4°C in the dark. The samples were then stained with 0.5 μg/mL anti-SARS-CoV-2 nucleocapsid-PE (ab283244, Abcam) for 1 hour at 4°C in the dark. Cells were analysed on an Aria Fusion (BD). Data was analysed using FlowJo and Graphpad Prism 9.4.1 software.
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