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Fetal calf serum (fcs)

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FCS is a type of spectroscopy-based instrument used for the analysis and characterization of molecular interactions and dynamics in small sample volumes. It measures the fluctuations in fluorescence intensity within a small, defined focal volume to provide information about the diffusion and concentration of fluorescently labeled molecules.

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51 protocols using fetal calf serum (fcs)

1

Cell Culture Conditions for Myeloma and Leukemia

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Human multiple myeloma cells (MM1.S) and acute lymphoblastic leukemia cells (CEM-C7-14 and CEM-C1-15) were cultured in RPMI1640 glutamax (Gibco, life technologies) supplemented with 10% fetal calf serum (Greiner bio-one), 100U/mL penicillin and 0.1mg/mL streptomycin (Gibco, life technologies), and were grown in a 5% CO2 incubator at 37°C. MM1.S cells were purchased from ATCC, CEM-C7-14 and CEM-C1-15 cells were kind gifts from Prof. Brad E. Thompson (University of Texas Medical Branch). Human embryonic kidney cells (HEK293T) and human lung carcinoma cells (A549) were cultured in DMEM (Gibco, life technologies) supplemented with 10% fetal calf serum (Greiner bio-one), 100U/mL penicillin and 0.1mg/mL streptomycin (Gibco, life technologies), and were grown in a 5% CO2 incubator at 37°C. HEK293T and A549 cells were obtained from the nuclear receptor lab (NRL) (VIB-UGent). All experiments were performed using charcoal-stripped serum (Gibco, life technologies) to eliminate the influence of endogenous hormones present in fetal calf serum. All cell lines were regularly tested for mycoplasma contamination and were negative.
The glucocorticoid dexamethasone (Dex) was purchased from Sigma Aldrich and dissolved in EtOH. In all experiments the total solvent concentration was kept equal in each condition.
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2

Culturing of NK-92, K562, 293FT, and Jurkat Cell Lines

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NK-92 cells (CRL-2407, ATCC, Manassas, VA, USA) were cultured in alpha Minimum Essential medium (Thermo Fisher Scientific, Waltham, MA, USA) without ribonucleosides and deoxyribonucleosides, supplemented with 2 mM L-glutamine, 2.2 g sodium bicarbonate (Sigma-Aldrich, Munich, Germany), 0.2 mM inositol (Sigma-Aldrich), 0.1 mM 2-mercaptoethanol (Sigma-Aldrich), 0.02 mM folic acid (Sigma-Aldrich), 100 U/mL recombinant IL-2 (Proleukin, Novartis, Basel, Switzerland), 12.5% horse serum (ATCC), 12.5% fetal calf serum (FCS, Greiner Bio-One, Frickenhausen, Germany), and 1% penicillin/ streptomycin (Thermo Fisher Scientific). K562 (ATCC CCL-243) cells were cultured in IMDM supplemented with 10% FCS (Greiner Bio-One) and 1% penicillin/streptomycin (Thermo Fisher Scientific). 293FT cells (R700-07, Thermo Fisher Scientific) were cultured in DMEM/high glucose medium supplement with 10% FCS (Greiner Bio-One), 0.1 mM MEM non-essential amino acids (NEAA, Thermo Fisher Scientific), 2 mM L-glutamine (Thermo Fisher Scientific), and 1 mM MEM sodium pyruvate (Thermo Fisher Scientific). The Jurkat cell line (ACC 282, DSMZ, Braunschweig, Germany) was cultured in RPMI-1640 medium (Thermo Fisher Scientific) with 10% FCS and 1% penicillin/streptomycin.
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3

NK Cell Isolation and Activation

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NK cells were isolated from fresh blood derived from healthy donors after signing informed consent or from healthy donor’s HLA-typed buffy coats. Donors with an HLA-C1+C2+Bw4+ genotype were selected. The use of buffy coats, being a by-product of a required Medical Ethical Review Committee (METC) procedure, does not need ethical approval in The Netherlands under the Dutch Code for Proper Secondary Use of Human Tissue. These buffy coats were anonymous, and the individuals from whom the samples originated did not object to their use. PBMCs were obtained by density gradient centrifugation of the donor sample using lymphoprep (Axis-Shield). NK cells were subsequently isolated by negative selection with an NK cell isolation kit using MACS beads and columns according to manufacturer’s protocol (Miltenyi Biotec, GmbH). For short-term activation, NK cells were cultured in RPMI-1640 medium (Gibco) supplemented with 10% fetal calf serum (Greiner Bio-One), 100 U/mL penicillin (Gibco) and 100 µg/mL streptomycin (Gibco) at 37 °C in humidified air containing 5% CO2 with 21% O2 (Sanyo MCO-20AIC, Sanyo Electric Co, Japan). NK cells were activated overnight with 1000 IU/mL recombinant human IL-2 (Proleukin, Novartis).
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4

Cell Culture and Compound Preparation Protocol

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MM1.S, MM1.R, CEM-C7-14 and CEM-C1-15 cells were cultured in RPMI1640 GlutaMAX (Gibco, life technologies), supplemented with 10% fetal calf serum (Greiner bio-one), 100U/ml penicillin and 0.1mg/ml streptomycin (Gibco, life technologies), and grown in a 5% CO2 incubator at 37°C. MM1.S, MM1.R were purchased from ATCC, CEM-C7-14 (C7-14) and CEM-C1-15 (C1-15) cells were a kind gift from Prof. Brad E. Thompson (University of Texas Medical branch). All experiments were performed using charcoal-stripped serum (Gibco, life technologies). All cell lines were regularly tested for mycoplasma contamination and were negative.
Dexamethasone (Dex) was purchased from Sigma Aldrich, dissolved in ethanol (EtOH) and stored at -20°C. Compound A (CpdA) was synthesized as described by Louw et al.[26 (link)], dissolved in EtOH, flushed with an inert gas (N2-vapours), protected from light and was stored at -80°C. Recombinant murine TNFα, obtained from the VIB protein service facility, was dissolved in cell culture medium and used at a final concentration of 2000IU/ml. The total solvent concentration in all experiments was kept equal in each condition.
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5

PBMC Isolation and Protein Extraction

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PBMCs were isolated from heparinized blood samples of healthy volunteers. Whole blood (20mL) was diluted with DPBS (ThermoFisher Scientific) in 1:1 ratio. As density centrifugation medium, Ficoll-Paque PLUS (GE healthcare) was used and 15mL was added to the SepMate tube (cat nr: 15460, 50mL format, StemCell Technologies) through the central hole of the SepMate insert. The diluted blood was added by pipetting it down the SepMate tube wall, followed by centrifuging the SepMate tube for 15’ at 1200g, room temperature (RT) with the brake on. The top layer containing the PBMCs and plasma is poured off in a fresh 50mL tube and is centrifuged for 8min at 300g, RT with the brake on. The supernatant is removed and the pellet is washed twice with RPMI1640 glutamax (Gibco, life technologies) supplemented with 2% fetal calf serum (Greiner bio-one), 100U/mL penicillin and 0.1mg/mL streptomycin (Gibco, life technologies) and centrifuged for 8min at 300g, RT with the brake on. Next, the cells were counted, transferred to a 6-well plate and induced for 2h with EtOH or Dex (1μM). Protein lysates were prepared using Totex lysis buffer.
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6

Frozen inoculum preparation and growth kinetics of S. pneumoniae

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Frozen bacterial inoculum was prepared by overnight culture on Columbia 5% blood agar, from which a few colonies were inoculated in liquid medium (50% M17, 50% casamino acids tryptone [CAT] medium, 0.25% glucose) for growth, all at 37°C and 5% CO2. At OD620 0.29 to 0.31 glycerol was added (end concentration, 16%), and aliquots were stored at −80°C. Growth kinetics at 37°C and 5% CO2 were measured every 10 min over 15 h at OD620 by microplate reader (Spark 10M, Tecan, Switzerland) with use of a humidity cassette. In each well of a sterile flat-bottomed 48-well plate (Nunclon Surface, Nunc, Denmark), 15 μL of inoculum was added to 1.5 mL of prewarmed rich growth medium (45% M17, 45% CAT, 0.225% glucose, 10% fetal calf serum [Greiner Bio-one], 26 U/mL catalase [Sigma-Aldrich C1345]). The growth medium was supplemented with catalase, which is protective of H2O2-mediated killing of S. pneumoniae and which is available in blood (66 (link)). For each isolate, six repeat measurements were performed on three separate days.
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7

Culturing HEK293T and MEF Cells

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HEK293T cell (ATCC) and MEF were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Gibco) with 10% fetal calf serum (Greiner Bio-one, Longwood, FL, USA) in a 37°C incubator with 5% CO2. Cells were transfected using Lipofectamine (Invitrogen) according to the manufacturer’s instruction or using polyethylenimine (Invitrogen) following manufacturer’s protocol. Bortezomib, MG132, E64, pepstatin A, Balfilomycin A 1 and cycloheximide were purchased from Sigma. siRNA against Ltn1 was bought from Ambion. siRNA against FOXO1 were obtained from Dharmacon and have been described previously (45 (link)).
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8

Culturing Bortezomib-Resistant Leukemia Cells

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Human T-cell ALL CCRF-CEM cells, human myeloid leukemia THP1 cells, and human multiple myeloma RPMI-8226 cells (ATCC, Manassas, VA, USA) were cultured in RPMI-1640 medium containing 2 mM glutamine (Invitrogen/Gibco, Carlsbad, CA, USA) supplemented with 10% fetal calf serum (Greiner Bio-One, Alphen a/d Rijn, The Netherlands) and 100 μg/ml penicillin/streptomycin (Invitrogen) at 5% CO2 and 37°C. Cell cultures were seeded at a density of 3×105 cells/ml and refreshed twice weekly. Bortezomib-resistant sublines of these cell lines were established previously [8 (link),9 (link)]. Authenticity of bortezomib-resistant and parental cell lines was verified by STR marker analysis for D12S1045, D8S1132, D19S253, and D17S1293.
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9

SCC-25 Cell Line Stimulation by FimA Protein

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The human oral tongue squamous cell carcinoma cell line SCC‐25 was purchased from the DSMZ (German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany, DSMZ numbers ACC 617). Cells were cultured in a medium containing Dulbecco's minimal essential medium:Ham's F12 (4:1 vol/vol), Hepes buffer (Invitrogen, Karlsruhe, Germany), and 10% fetal calf serum (Greiner, Frickenhausen, Germany). The cells were seeded in six‐well plates at 1 × 106 cells per well and grown at 37°C in a humidified atmosphere with 5% CO2 to 80% confluency before stimulation. The cells were stimulated using 10 µg/ml recombinant FimA protein for 4 and 24 h.
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10

PBMC Isolation via Ficoll Gradient

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PBMC isolation was facilitated by Ficoll density gradient centrifugation. The gradient was a commercially available Ficoll separation medium (Lymphoprep, STEMCELL Technologies, Köln, Germany). PBMCs were resuspended in RPMI 1640 medium with Glutamax (Gibco Life Technologies, Darmstadt, Germany) supplemented with 10% heat-inactivated fetal calf serum (Greiner Bio-One, Frickenhausen, Germany), 2% of penicillin and streptomycin, as well as with non-essential amino acids (MEM NEA) and sodium pyruvate (all from Gibco Life Technologies).
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