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Cas9 nuclease

Manufactured by Synthego

Cas9 nuclease is a DNA-cleaving enzyme derived from the CRISPR-Cas system. It functions to create double-strand breaks in target DNA sequences, guided by a small RNA molecule. Cas9 nuclease is a core component used in CRISPR gene editing applications.

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4 protocols using cas9 nuclease

1

CRISPR-Mediated Receptor Ablation

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IL-17C HEK-Blue reporter cells (Invivogen) were transfected in 12-well plates with single guide RNA targeting either IL17RA or IL17RB and Cas9 nuclease (Synthego) using Lipofectamine CRISPRMAX Cas9 Transfection Reagent (Thermo Fisher). Five days post-transfection, cells were seeded into 10-cm dishes under limiting dilution. After 2–3 weeks, well-separated single colonies were transferred (via cloning discs) into 24-well plates, then expanded and screened for loss of receptor expression and responsiveness to IL-25.
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2

Electroporation and Genomic Analysis of BACH2 Enhancer CRISPR Edits in CD34+ HSPCs

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Two days after thawing, RNP complexes were electroporated into CD34+ HSPCs using a P3 Primary Cell 4D-Nucleofector X Kit S on the Lonza 4D Nucleofector system. Complexes were formed by combining 50 pmol of Cas9 nuclease (IDT) and 100 pmol total of sgRNAs (Synthego). Cells were treated either with two pairs of guides targeting the putative BACH2 enhancer or a negative control targeting AAVS1 (Supplementary Table 11). Electroporated cells were harvested three days post-nucleofection for genomic DNA and RNA extraction using the AllPrep DNA/RNA Micro Kit (QIAGEN) according to kit instructions. Deletions, inversions, and wild-type alleles were quantified in the bulk population using qPCR (Supplementary Table 14).
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3

CRISPR/RNP Transfection for T Cell Manipulation

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CRIPSR/RNP transfection was performed as previously described.51 (link) RNP electroporation was performed with naive CD8+ T cells (for LCMV Cl13 infection), or total CD8+ T cells (for tumor experiments) isolated from spleens of donor P14 mice using EasySep immunomagnetic negative selection kits from STEMCELL. Briefly, Cas9 (Alt-R S.p. Cas9 Nuclease, IDT) and sgRNAs (Synthego) were combined and incubated at RT for 10 min. For each target, two sgRNAs was used to increase knockout efficiency. Electroporation was performed using the 4D-NucleofectorTM 4 Core Unit and P3 primary cell 4D-NucleofectorTM5 X kit S with program DN100. Following the electroporation, cells were kept in an incubator for 10 min at 37°C. For LCMV Cl13 infection studies, 2,500 cells were immediately adoptively transferred to naive C57BL/6 recipient mice via i.v. injection followed by LCMV Cl13 infection. For tumor studies, the cells were activated with anti-CD3 and anti-CD28 for 3 days and 1x106 cells were adoptively transferred to separate groups of tumor-bearing mice. For co-transfer tumor experiments, cells were mixed at a 1:1 ratio (1x106) before adoptive transfer.
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4

CRISPR/RNP Transfection for T Cell Manipulation

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CRIPSR/RNP transfection was performed as previously described.51 (link) RNP electroporation was performed with naive CD8+ T cells (for LCMV Cl13 infection), or total CD8+ T cells (for tumor experiments) isolated from spleens of donor P14 mice using EasySep immunomagnetic negative selection kits from STEMCELL. Briefly, Cas9 (Alt-R S.p. Cas9 Nuclease, IDT) and sgRNAs (Synthego) were combined and incubated at RT for 10 min. For each target, two sgRNAs was used to increase knockout efficiency. Electroporation was performed using the 4D-NucleofectorTM 4 Core Unit and P3 primary cell 4D-NucleofectorTM5 X kit S with program DN100. Following the electroporation, cells were kept in an incubator for 10 min at 37°C. For LCMV Cl13 infection studies, 2,500 cells were immediately adoptively transferred to naive C57BL/6 recipient mice via i.v. injection followed by LCMV Cl13 infection. For tumor studies, the cells were activated with anti-CD3 and anti-CD28 for 3 days and 1x106 cells were adoptively transferred to separate groups of tumor-bearing mice. For co-transfer tumor experiments, cells were mixed at a 1:1 ratio (1x106) before adoptive transfer.
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