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Agilent 1100 series lc msd ion trap mass spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 1100 series LC/MSD ion trap mass spectrometer is a laboratory equipment used for the analysis of chemical compounds. It combines liquid chromatography (LC) with mass spectrometry (MSD) to provide highly sensitive and selective detection of a wide range of analytes. The core function of this instrument is to separate, identify, and quantify chemical components within a sample.

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4 protocols using agilent 1100 series lc msd ion trap mass spectrometer

1

Spectroscopic Analysis of Chemical Compounds

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Data of optical rotations, UV, and ECD spectra were obtained using Jasco P2000, JASCO V-650, and Jasco J-815 spectrophotometers (Jasco Corporation, Tokyo, Japan), respectively. IR spectra were measured with a Nicolet 5700 spectrometer (Thermo Nicolet Corporation, Madison, SD, USA). GC was performed with an Agilent 7890A instrument (Agilent Technologies, Waldbronn, Germany). The 1D- and 2D-NMR spectra were obtained at 500 or 600 MHz for 1H and at 125 or 150 MHz for 13C, using Bruker 600 and 500 MHz spectrometers (Bruker Corporation, Karlsruhe, Germany). HRESIMS data were acquired with an Agilent 1100 series LC/MSD ion trap mass spectrometer (Agilent Technologies, Waldbronn, Germany). Column chromatography was performed using macroporous resin (Diaion HP-20 and SP-700, from Mitsubishi Chemical Corp., Tokyo, Japan and Sephadex LH-20 columns Pharmacia Fine Chemicals, Uppsala, Sweden. Preparative HPLC was carried out with a Shimadzu LC-6AD instrument with an SPD-20A detector Shimadzu Corp., Tokyo, Japan, using a YMC-Pack ODS-A column (250 mm × 20 mm, 5 μm; YMC Corp., Kyoto, Japan). HPLC-DAD analysis was performed using an Agilent 1200 series system (Agilent Technologies, Waldbronn, Germany) with an Apollo C18 column (250 mm × 4.6 mm, 5 μm; Alltech Corp., Lexington, KY, USA).
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2

Spectroscopic Characterization of Compounds

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ESIMS was performed using an Agilent 1100 series LC/MSD ion trap mass spectrometer (Agilent, Santa Clara, CA, USA). The 1D- and 2D-NMR spectra were obtained in CD3OD and DMSO with TMS as the internal standard on Varian 500 MHz and Bruker AV500-III spetrometers (Bruker Corporation, Billerica, MA, USA). Column chromatography was performed over silica gel (160–200 mesh, Qingdao Marin Chemical, Inc., Qingdao, China), RP-18 reverse phase silica gel (43–60 μm), cyanopropyl silica gel (43–60 μm) and Sephadex LH-20 (Pharmacia Biotech AB, Uppsala, Sweden). LPLC experiments were performed with Combiflash with a UV-detector (ISCO Companion, Lincoln, NE, USA). HPLC experiments were performed using a Waters 2545 system with 2998 diode array detector (Waters Corporation, Milford, MA, USA), using the Waters Sunfire and X-Bridge (250 mm × 10 mm i.d.) preparative columns packed with C18 (5 μm) (Alltech Associates, Inc., Bannockburn, IL, USA). TLC was carried out with glass precoated silica gel GF254 glass plates. Spots were visualized under UV light and by spraying with 8% H2SO4 in 95% EtOH followed by heating.
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3

Spectroscopic Characterization of Compounds

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Optical rotations were measured on a JASCO P-2000 polarimeter (JASCO Inc. Tokyo, Japan). UV spectra were measured on a JASCO V650 spectrophotometer (JASCO Inc.). The CD spectra were measured on a JASCO J-815 CD spectrometer (JASCO Inc.). IR spectra were recorded on a Nicolet 5700 FT-IR spectrometer (Thermo Nicolet, Waltham, MA, USA). NMR spectra were acquired with VNS-400 spectrometers and VNS-500 spectrometers (Varian Inc., Palo Alto, CA, USA). HRESI-MS spectra were collected on an Agilent 1100 series LC/MSD ion trap mass spectrometer (Agilent Technologies Ltd, Santa Clara, CA, USA). Preparative HPLC was performed on a Shimadzu LC-6AD (SHIMADZU Inc. Tokyo, Japan) instrument with an SPD-20A detector, using an YMC-Pack ODS-A column (2 × 25 cm, 5 µm). Column chromatography was performed with silica gel (200–300 mesh, Qingdao Marine Chemical Inc., Qingdao, China) and ODS (50 µm, YMC, Kyoto, Japan). Chiral AD-H column (4.6 mm × 250 mm, 5 µm, Daicel, Osaka, Japan); TLC was carried out on glass precoated silica gel GF254 plates. Spots were visualized under UV light or by spraying with 10% sulfuric acid in EtOH, followed by heating.
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4

Synthesis and Characterization of PEG-Pam2Cys

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Pam2Cys is hydrophobic and insoluble in physiological media; therefore, we synthesized the agonist with a polyethylene glycol molecule attached to confer solubility and allow administration by the intranasal (i.n.) route. PEG-Pam2Cys was synthesized in house using Fmoc-based chemistry as described previously (1 (link)). The product was purified by reversed-phase high-performance liquid chromatography (HPLC) using a C4 VYDAC column (10 mm × 250 mm; Alltech, NSW, Australia) installed in a Waters HPLC system (Waters Millipore, Milford, MA, USA). The purity of PEG-Pam2Cys was determined by HPLC using a VYDAC C8 column (4.6 mm × 250 mm) installed in a Waters system and was found to be >95%. The authenticity of the product was determined by mass analysis (mass value found 1,502.2 Da; expected mass 1,502.1 Da) using an Agilent 1100 Series LC/MSD ion-trap mass spectrometer (Agilent, Palo Alto, CA, USA).
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