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27 protocols using anti β actin 4970

1

Protein Isolation and Western Blotting Analysis

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Proteins were isolated from cells and tissues using the following methods. Cells from cell culture were washed with phosphate-buffered saline and collected in lysis buffer and processed as previously outlined87 (link). Protein content was determined using the BioRad protein assay. Equal amounts of whole protein lysate were separated on SDS-polyacrylamide gels and transferred to activated polyvinylidene fluoride membranes (Millipore) Western blotting was done in keeping with standard protocols. Primary antibodies used were: anti-HELLS (ABD41, Millipore), anti-Cyclin D2 (sc-593, Santa Cruz), anti-Cyclin D1 (NBP2-32840, Novus Biologicals), anti-β-actin (4970S, Cell Signaling Technology), anti-β-tubulin (T4026, Sigma), and anti-cleaved caspase-3 (9661L, Cell Signaling Technology). Secondary antibodies conjugated to horseradish-peroxidase were: anti-mouse (715-035-150, Jackson Immuno Research), and anti-rabbit (31460, Pierce, Life Technologies). Blots were developed using Pierce ECL reagents, and chemiluminescence was detected by exposing membranes to GE-Amersham film. Blots were scanned into digital files and exposures were selected for densitometry. Densitometric analysis was done using ImageJ.
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2

Western Blot Analysis of AhR Protein

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Cells were lysed in RIPA buffer supplemented with protease inhibitor cocktail (Roche). Total cell extracts were run on a polyacrylamide gel and transferred to the nitrocellulose membrane (Whatman). The following primary antibodies were used: anti-AhR antibody (BML-SA210, Enzo, 1:1,000) and anti-β-actin (4970s, Cell Signaling Technology, 13E5, 1:5,000). The immunoblot was developed using horseradish peroxidase-conjugate secondary antibodies (Bio-Rad) and the ECL Western Blotting Detection kit, as instructed by the manufacturer (GE Healthcare). Full scans in Supplementary Fig. 3.
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3

Western Blot Analysis of Proteins

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Proteins from transfected cells were extracted with RIPA lysis buffer (Beyotime, China) supplemented with PMSF (Beyotime, China). The proteins were separated by 10–15% SDS–polyacrylamide gel electrophoresis (SDS–PAGE). Then the proteins were transferred to PVDF membranes and incubated with specific antibodies. Anti-EZH2(5246S), anti-LC3B (3868S), and anti-β-actin (4970S) antibodies were purchased from Cell Signaling Technology (Boston, MA, USA). Anti-HMGA1 (ab252930) and anti-DIRAS3 (ab107051) antibodies were purchased from Abcam (Cambridge, MA, USA). Anti-ULK1 (20986-1-AP) and anti-α-tubulin (11224-1-AP) antibodies were purchased from ProteinTech. Band densities were quantified by Image J software (NIH, MD, USA).
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4

Celecoxib Pretreatment and Radiation Effects

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The celecoxib pretreatment and irradiation were carried out in sequence. The HBMECs were collected at the indicated timepoints and lysed with RIPA buffer to extract the proteins (Invitrogen, Carlsbad, CA, USA). An amount of 30 µg of proteins was loaded in each lane for polyacrylamide gel electrophoresis. The proteins were transferred to PVDF membranes, which were then blocked at room temperature for 2 h with PBST (PBS with 0.1% Tween-20) containing 5% non-fat milk. The specific antibodies (1:1000) were incubated for 16 h at 4°C. The secondary antibodies (1:2000) were incubated for 1 h at room temperature after thorough TBST washing. The bands were revealed using an ECL reagent kit (Pierce Chemical, Dallas, TX, USA) and observed using a chemiluminescence gel imager (Carestream Health, Inc., Rochester, NY, USA). Anti-Caspase-3 (ab184787), anti-phospho-JNK (ab124956), anti-JNK (ab208035) and anti-COX-2 (ab15191) were purchased from Abcam (Cambridge, MA, USA) while anti-β-actin (4970 S) was purchased from Cell Signaling Technology (Beverly, MA, USA).
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5

Immunological Reagents for Autophagy Research

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The antibodies used in the study are as follows: Anti-LC3B (L7543) and anti-SQSTM1 (P0067) antibodies were obtained from Sigma-Aldrich. Anti-Flag (14793S) and anti-β-actin (4970S) were obtained from Cell Signaling Technology. Anti-PYCR2 (17,146–1-AP), horseradish peroxidase (HRP)-conjugated goat anti-mouse/rabbit secondary antibodies (SA00001), coralite 594/488 conjugated goat anti-mouse/rabbit IgG(H + L) antibodies (SA00013) were obtained from Protein Tech Group. Anti-mCherry (183,628) antibody was purchased from abcam and anti-GFP (T0005) antibody was purchased from affinity. PAGE Gel Fast Preparation Kit (PG112 and PG114), Protein Free Rapid Blocking Buffer (PS108) and Omni-ECL™ Enhanced Pico Light Chemiluminescence Kit (SQ101) were obtained from Epi Zyme. Electrophoresis buffer (FD9001) and Western transfer buffer (FD9002) were obtained from Fdbio science.
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6

Quantifying HDAC Protein Levels in Mouse Spleen

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Total proteins were extracted from spleen PMN- and M-MDSC sorted from spleens of EL4 tumor bearing mice. RIPA buffer supplemented with 1% of protease inhibitor cocktail (P8340-5ML; Sigma Aldrich) was used. Extracted proteins were resolved by electrophoresis using 10% SDS-PAGE gels (Invitrogen). 10 μg of protein was loaded per lane and proteins were electroblotted onto PVDF membrane (Immobilon-P, Milipore). The membranes were blocked with 5% non-fat dry milk in TBS plus 0.1% Tween20 (TBS-T) for 1 hr at room temperature, and then incubated with the primary antibodies in 5% non-fat dry milk in TBS-T overnight at 4°C. The primary antibodies used (dilution 1:1000) were anti-HDAC1 (5356S), anti-HDAC6 (7612S) and antiβactin (4970S) from Cell Signaling Technology, Inc., and anti-HDAC2 (32117), anti-HDAC3 (32369), anti-HDAC8 (187139) and anti-HDAC10 (108934) from Abcam. After washing, the membranes were incubated with HRP-linked secondary antibodies specific to rabbit and mouse antibodies (Cell Signaling Technology, Inc.) for 1 hr at room temperature. Detection was visualized by Pierce ECL Western Blotting Substrate (Thermo scientific).
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7

Amyloid Precursor Protein and Autophagy Pathway Analysis

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β-Asarone was prepared at the Center Lab of the First Affiliated Hospital of Guangzhou University of Chinese Medicine according to the patent “Refined Method of β-asarone” (application number: cn200510100524.9). Its purity was 99.701%, as determined by gas chromatography-mass spectrometry (GC-MS).
Rabbit monoclonal anti-amyloid precursor protein (APP, 76600S), anti-Beclin-1 (3495S), anti-p62 (39749S), anti-Aβ1-42 (12843S), anti-β-actin (4970S), and horseradish peroxidase (HRP)-labeled secondary goat anti-rabbit IgG (7074S) antibodies were obtained from Cell Signaling Technology (United States). Rabbit polyclonal anti-LC3 (ab48394) antibody was procured from Abcam (United Kingdom).
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8

MMP-12 Immunostaining Technique

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An anti-F4/80 anti-body (Cat: 14-4801-81) was purchased from eBioscience and anti-MMP12 (MA5-24851) were purchased from Thermo Fisher (Thermo Fisher Scientific, Cambridge, Massachusetts, USA). An anti-GAPDH (5174P) and anti-β-actin (4970S) were purchased from Cell Signaling Technology Inc (CST). Recombinant mouse MMP-12 protein (3467-MPB-020) was purchased from R&D Systems, Inc. The MMP12 inhibitor MMP408 (444291) was purchased from Merck Millipore Company.
Alexa Fluor-488 donkey antibody (P/N SA11055S) was purchased from Invitrogen (Thermo Fisher Scientific, Cambridge, Massachusetts, USA).
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9

Investigating Cellular Signaling Pathways

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DON was obtained from Sigma-Aldrich (St. Louis, MO, USA). Cell culture medium and supplements were purchased from Life Technologies (Grand Island, NY, USA). Anti-phospho-p38 (4511), anti-p38 (8690), anti-phospho-JNK (4668), anti-JNK (9252), anti-phospho-ERK (4370), anti-ERK (4695) and anti-β-actin (4970) antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). SB203580 was obtained from Promega (Madison, WI, USA). U0126 and SP600125 were acquired from Cayman Chemicals (Ann Arbor, MI, USA).
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10

Immunoblotting for Cellular Proteins

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Cellular proteins were separated by SDS-PAGE gel and transferred onto a polyvinylidene difluoride(PVDF) membrane (Millipore) using Bio-Rad electrophoresis system. The PVDF membrane was blocked in 5% non-fat milk for 1 h at room temperature and the diluted primary antibodies (1 (link)–1000) were incubated with the target protein overnight at 4°C. Precipitates and lysates not subjected to precipitation were analyzed by immunoblotting with the following antibodies: anti-14-3-3ζ (sc-1019) and anti-aPKC antibodies (sc-216) were from Santa Cruz Biotechnology; and anti-P-aPKCThr560 (CG1453) antibody was purchased from Cell Applications. Anti-IκBα (4814), anti-P-p65 (3303), anti-NF-κB p65 (8242), and anti-β-actin (4970) antibodies were from Cell Signaling Technology. Immunoreactive complexes were detected using horseradish peroxidase-conjugated secondary antibodies (1:2000) and an enhanced chemiluminescence (ECL) detection system.
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