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8 protocols using elk 1

1

Immunohistochemical Analysis of Breast Cancer

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The array slides (breast cancer BR20834 and TNBC BR1503b) were purchased from US Biomax Inc. (Rockville, MD, USA). The BR20834 slides included 205 invasive ductal carcinomas, 2 invasive lobular carcinomas, and 1 invasive papillary carcinoma. However, 15 invasive ductal carcinomas were lost during the evaluation. The BR1503b slides included 7 breast intraductal carcinoma and 60 breast invasive ductal carcinoma, which contained 30 TNBC, duplicate cores per case. Detailed information for this array can be viewed at http://www.biomax.us/tissue-arrays/. The sections were immunostained for PKCα (1:200) (BD Biosciences, San Jose, CA, USA), Elk-1 (1:400) (Santa Cruz, CA), and MZF-1 (1:400) (Santa Cruz) and the expression was scored by staining as follows: 1+, weak; 2+, moderate; and 3+, strong.
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2

Western Blot Analysis of Endothelial Proteins

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Total proteins from PMVECs and lung tissues were isolated using radio-immunoprecipitation assay lysis (20–188, Merck, Zurich, Switzerland), quantified using BCA, boiled in sample preparing buffer to prepare samples, and separated using sodium dodecyl sulfate polyacrylamide gel electrophoresis. The separated proteins were transferred to PVDF membranes, which were sealed in 3% skimmed milk for 30 min and probed with diluted primary antibodies overnight at 4 °C. On the next day, PVDF membranes received washing and 1-h probing with HRP-coupled secondary antibody (1:5000, ab205719, Abcam) at room temperature. The used antibodies are as follows: Fcgr2b (1:1000, 550,270, BD Biosciences), vascular endothelial (VE)-cadherin (1:3000, sc-9989, Santa Cruz Biotechnology), β-catenin (1:3000, 13-8400, Invitrogen), Elk1 (1:1000, sc-365,876, Santa Cruz Biotechnology), GAPDH (1:5000, ab8245, Abcam).
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3

Protein Expression Analysis in Mouse VSMC

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At specified time intervals and after serum starvation and/or transient transfection, immortalized mouse carotid VSMC were harvested with PBS and pelleted by centrifugation for 10 min in a JS-4.2 rotor at 3000 rpm. The pellet was resuspended in hypotonic buffer (20 mM HEPES, pH 7.9, 25% glycerol, 1.5 mM MgCl2, 0.8 M KCl, 0.2 mM EDTA, 0.2 mM PMSF, 0.5 mM DTT) and incubated on ice for 30 min. Cell lysis was confirmed with microscopy and the cytoplasmic extract was removed by centrifugation at 18,000 RCF for 30 min at 4’C. The cell extracts were normalized using Lowry method and loaded on a 10% Tris Glycine gel and subjected to electrophoresis for 90 min at 125 V. Proteins were transferred to PVDF membranes and blocked in 5% milk with 1% BSA. The membrane was incubated with primary antibody (Elk-1 (1:1,000, Santacruz, sc-355), c-Myb (1:500, Santacruz, sc-517), sm22alph (1:1000, Santacruz, sc-53015) or GAPDH (1:10,000, Santacruz, sc-47724)) overnight at 4’C. The membranes were washed and incubated with donkey anti rabbit IgG (BioRad, #1706515) for 1 h at RT. The membranes were again washed and then incubated with Western ECL Lighting (Perkin-Elmer) for 1 min and detected on MiniBis Pro (Frogga Bio).
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4

Afatinib regulation of PP2A signaling

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Afatinib (Giotrif®) was purchased from Selleck chemicals (Houston, TX). For in vitro studies, afatinib at various concentrations was dissolved in DMSO and then added to cells in serum-free RPMI1640. PP2A inhibitor and activator were purchased from Sigma (Sigma-Aldrich, St. Louis, Missouri) and Merck Millipore (Billerica, MA), respectively. Antibodies for immunoblotting including anti-CIP2A, AKT, Elk-1 and PARP were purchased from Santa Cruz Biotechnology (San Diego, CA). Other antibodies including anti-PP2A and p-AKT (Ser473) were purchased from Cell Signaling (Danvers, MA).
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5

Protein Expression Analysis in Muscle Tissue

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Muscles were homogenized and lysates prepared as previously described (21 (link)). Proteins were resolved by SDS-PAGE, transferred to Immobilon-FL membranes (MilliporeSigma) and incubated overnight with antibodies against, calcineurin A (1:500, EP1669Y, Abcam), dystrophin (1:200, PA1-21011, Thermo Fisher Scientific), ELK-1 (1:100, E-5, Santa Cruz Biotech), p-ELK1 (1:200, B-4, Santa Cruz Biotech), EGR1 (1:500, 15F7, Cell Signaling Technology), ERK1/2 (1:2000, 137F5, Cell Signaling Technology), GAPDH (1:500 000, 10R-G109A, Fitzgerald), MEK1/2 (1:1000, 9122, Cell Signaling Technology), MSK1 (1:500, C27B2, Cell Signaling Technology), p-MSK1 Thr581 (1:300, 9595, Cell Signaling Technology), p-MSK1 Ser376 (1300, 9591, Cell Signaling Technology), RSK (1:1000, 32D7, Cell Signaling Technology), p-RSK1 Ser380 (1:500, 934, Cell Signaling Technology), p-RSK1 Thr359 Ser363 (1:500, 9344, Cell Signaling Technology), δ-sarcoglycan (1:500, EPR8706, Abcam), β-tubulin (E7, 1:200, DSHB), and utrophin A (1:500, 8A4, Santa Cruz Biotech). Membranes were then incubated with IRDye secondary antibodies (1:6000, LI-COR Biosciences) and visualized using an Odyssey CLx imaging system (LI-COR Biosciences; see complete unedited blots in the supplemental material).
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6

Protein Extraction and Western Blot Analysis

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Total protein was extracted from radioimmunoprecipitation assay (RIPA) lysate (Applygen, Beijing, China). Primary antibodies included mouse monoclonal anti‐CEA (#2383, CST, USA), ELK1 (sc‐365876, Santa Cruz, USA) and p‐ELK1 (sc‐8406, Santa Cruz), rabbit monoclonal anti‐c‐KIT (#3074, CST), p‐KIT (#3391, CST), ERK1/2 (#9102, CST) and p‐ERK1/2 (#9101, CST). Anti‐β‐actin (sc‐47778, Santa Cruz) was used as the internal control. Immunoblotting bands were detected using ECL chemiluminescence (Thermo Scientific) and viewed under a Fusion FX Vilber Lourmat imager (France).
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7

AXL and Downstream Signaling Pathway

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Primary antibodies to AXL (amino and carboxyl terminals), Gas6, ELK1, p-ELK1, and PARP1 were from Santa Cruz Biotechnology. HRP-conjugated anti-goat, anti-mouse, and anti-rabbit secondary antibodies were from Santa Cruz Biotechnology. Anti-phospho-AXL (Y779) was made-to-order from Genetex. Anti-phospho-JNK was from Cell Signal, Inc. Antibody to actin was from Sigma-Aldrich.
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8

Electrophoretic Mobility Shift Assay for Transcription Factor Binding

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The details of electrophoretic mobility shift assay (EMSA) have been described elsewhere 37. The double‐stranded synthetic oligonucleotides carrying a defined binding site for AP‐1, ATF‐2, p53, NF‐κB and ELK‐1 (Santa Cruz Biotechnology Inc.), ATF‐3 (5′‐GTGACGT[AC][AG]‐3′) were end‐labelled with [γ‐32P] ATP (Hartmann Analytika, Munich, Germany) in the presence of T4 polynucleotide kinase (Genecraft, Munster, Germany). Around 4 μg of nuclear extracts were bound to a labelled probe in a total volume of 30 μl for 30 min. at room temperature in binding buffer (10 mM Tris, pH 7.5; 50 mM NaCl, 1 mM EDTA; 1 mM MgCl2; 0.5 mM DTT and 4% glycerol). The specificity of the binding was analysed by competition with an unlabelled oligonucleotide assay. The competition assay was performed in the same manner except that unlabelled probes containing oligonucleatide sequences (binding sites) were incubated with nuclear extracts for 20 min. at room temperature before adding the labelled probes. Electrophoresis was performed for 3 hrs at 100 V in 0.5 X Tris‐borate‐EDTA running buffer at room temperature. The dried gel was visualized by exposure to high performance autoradiography film.
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