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12 protocols using sc 25269

1

Immunofluorescence Analysis of Neural Markers

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For immunofluorescence analysis, 25 μm serial cryosections were obtained using a CM3050 cryostat (Leica Microsystems, Wetzlar, Germany). After incubation in a blocking buffer (1 × PBS/1% bovine serum albumin/0.3% Triton X-100) for 1 hr at room temperature, sections were incubated with the following primary antibodies overnight in PBS at 4°C: mBDNF (ab75040, Abcam), pTrkB (ab131483, Abcam), TH (sc25269, Santa Cruz Biotechnology, Inc), DAT (sc32259, Santa Cruz Biotechnology, Inc), BrdU (MCA2483, Bio-Rad, Hercules, CA, USA), NeuN (ABN78, Millipore Corporation), and Iba1 (019–19741, Wako Chemicals, Richmond, VA, USA). Sections were washed with PBST and incubated with fluorescent secondary antibodies (A11001, A11007, or A11037, Invitrogen, Carlsbad, CA, USA; CA94010, Vector Laboratories, Inc, Burlingame, CA, USA) for 2 hr at room temperature. Sections were mounted onto slides using a mounting medium (H-1200, Vector Laboratories, Inc) and imaged using a fluorescence microscope (Carl Zeiss Imager M1, Carl Zeiss AG, Oberkochen, Germany). Immunofluorescence was analyzed using the IMT i-Solution Inc 10.1 (17TH-5989 Walter Gage Rd., Vancouver, BC, CA) image analysis software.
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2

Immunohistochemical Analysis of Neuronal Markers

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Following the collection of tissue, the samples were immersed in 4% paraformaldehyde for 48 h. Paraffin wax was used to embed them, which was then cut into sections of 5 μm. These sections underwent a gradient dewaxing and antigen retrieval using a citric acid solution. The activity of endogenous peroxidase was inhibited by applying 3% hydrogen peroxide for 15 min. Following rinsing, the sections were obstructed using a 3% BSA solution for 30 min. Subsequently, they were incubated with the primary antibody at 4 °C overnight. The next day, paraffin sections were brought to room temperature for 30 min and rinsed with PBS three times, each lasting 5 min. Afterwards, the second antibody was added gradually and left to incubate at ambient temperature for 50 min. After washing, DAB was added dropwise, and the reaction was terminated by microscopic control of color development time and rinsing after the appearance of positivity. Hematoxylin staining was rinsed after 1 min, and the hematoxylin differentiation solution was applied for several seconds. After dehydration and sealing, microscopic observation was performed, and data were collected. The following antibodies were used: PGP9.5(1:200, Cat# ab108986, Abcam), TH (1:200, Cat# sc25269, Santa Cruz), CHAT (1:200, Cat# ab137869, Abcam).
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3

Immunofluorescence Staining of DYT5b and DAT

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MN9D cells were seeded on a six-well chamber slide for treatment. The cells were then rinsed with PBS and fixed with 4% paraformaldehyde for 15 min at 26–28 °C. The cells were rinsed with PBS, then blocked and permeabilized with 1% normal goat serum and 0.5% TritonX-100 in PBS. The cells were then incubated with the following primary antibodies: mouse monoclonal anti-DYT5b antibody (1:200 dilution in blocking buffer, sc-25269, Santa Cruz Biotechnology), or rabbit polyclonal anti-DAT antibody (1:200 dilution in blocking buffer, sc-14002, Santa Cruz Biotechnology) overnight at 4 °C. The following day after three washes with PBS, the cells were incubated with appropriate secondary antibodies: DyLight 488 anti-rabbit IgG and DyLight 594 anti-mouse IgG (1:200, DI-1088, DI-2594, both Vector Labs, Burlingame, CA, USA) for 40 min at 26–28 °C. The cell nucleus was labeled with 4′,6-diamidino-2-phenylindole (DAPI) (C0065, Solarbio, Beijing, China) for 5 min. After three washes with PBS, the cover slips were sealed with Antifade Mounting Medium (P0128, Beyotime Biotechnology). The results were arranged and analyzed with Image-Pro Plus 6.
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4

Immunofluorescence Analysis of PVN Regions

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According to the specific location of the PVN in the rat brain atlas, transverse sections with a thickness of 18 μm were obtained and immunofluorescence staining was performed [34 (link)]. The primary antibodies were SIRT1 (#7475S, CST, MA, USA, 1:400 dilution), NOX4 (ab-133303, Abcam, Cambridge, UK, 1:1000 dilution), TH (sc-25269, Santa Cruz, TX, USA, 1:50 dilution), and GAD67 (ab-26116, Abcam, Cambridge, UK, 1:200 dilution). Dihydroethidium (DHE, Molecular Probes, Eugene, OR, USA) was used to examine ROS generation.
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5

Mapping Chronic Neuronal Activation in the PVN

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Rats were anesthetized and fixed with perfusion using 0.01M phosphate-buffered solution (PBS) into the left ventricle first and then with 4% paraformaldehyde. The brain samples were collected and soaked in 4% paraformaldehyde and then 30% sucrose. Tissue microdissection was used to separate the PVN tissue. Immunofluorescence was performed to observe Fra-like immunoreactivity (Fra-LI, a marker of chronic neuronal activation), tyrosine hydroxylase (TH), GABA, Glu. Antibody origin and proportion: Fra-LI (sc-253, Santa Cruz), TH (sc-25269, Santa Cruz), GABA (ab86186, Abcam), Glu (ab9440, Abcam). Frozen sections containing PVN were permeated with 0.3% Triton-X for 30 min at 37°C prior to incubation with antibody at 4°C overnight. After washing with PBS three times, sections containing PVN were incubated with Alexa 488-labeled secondary antibody (Invitrogen) and Alexa 594-labeled secondary antibody (Invitrogen) for 120 min at 37°C. Briefly, frozen brain sections were incubated with 0.3% Triton-X for 30 min at 37°C, and primary antibody at 4°C overnight. After being washed with PBS, incubated with corresponding secondary antibody for 120 min at 37°C, sections were covered with coverslips and imaged using Nikon microscopy (Kang et al., 2011 (link)).
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6

Unbiased Counting of Dopaminergic Neurons

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Unbiased counting of TH+ dopaminergic neurons was applied to the substantia nigra pars compacta (SNpc) region, as previously reported [19 (link)]. After being exposed to polyclonal primary antibody mouse anti-Tyrosine Hydroxylase (TH) (1:100; sc-25269; Santa Cruz Biotechnology, Santa Cruz, CA, USA) for an overnight period, each slice was processed. After counterstaining brain sections with cresyl violet for Nissl staining, the sections were coated, and TH+ neurons were counted using a specialized program. The figures are shown by 20× and 40×.
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7

Neuroinflammation and Oxidative Stress

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Acetic acid, disodium hydrogen phosphate, reduced glutathione (GSH), reduced nicotinamide adenine dinucleotide phosphate (NADPH), Potassium chloride, Ammonum chloride, Sodium dihydrogen phosphate, and Bovine Serum Albumin (BSA) were procured from Sisco Research Laboratories (SRL; Mumbai, India). 1-Methyl-4-phenyl-1,2,3,6-tetra hydropyridine (MPTP), Normal Goat Serum (NGS) from Sigma–Aldrich (St. Louis, MO, United States). Protein estimation kit by Bradford GeNeiTM, hydrogen peroxide (H2O2), and potassium dichromate were purchased from Merck (Darmstadt, Germany), Sodim dodecyl sulfate (SDS), Thiobarbituric acid (TBA), Griess reagent and DABCO were procured from HiMedia (Mumbai, India). Sodium nitrite and Paraformaldehyde were purchased from Lobachemie, India. Primary antibodies for TH (SC-25269), iNOS (SC-651), Glial Fibrillary Acidic Protein (GFAP) (SC-33673) and Intercellular Cell Adhesion Molecule (ICAM) (SC-8439) were procured from Santa Cruz, Biotechnology (Santa Cruz, CA, United States) and the primary antibodies for TNF-α (ab1793), NF-κB (ab16502), DAT (ab111468), and pAkt1 (ab81283) were purchased from Abcam Life Science, Biogenuix Medsystems, Pvt. Ltd. (New Delhi, India), secondary fluorescent tagged antibodies for IHCCy2-conjugated and cy3-conjugated were procured from Merck Millipore and Chemicon respectively.
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8

Tyrosine Hydroxylase Immunohistochemistry

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Brain sections were prepared as described in Section 4.7 To block endogenous peroxidase activity, the free-floating sections were immersed in 1% H2O2. The sections were treated with blocking buffer (5% normal chicken serum and 0.3% Triton X-100 in cold PBS) and incubated with tyrosine hydroxylase (1:200, #SC-25269, Santa Cruz Biotechnology, Santa Cruz, CA, USA) primary antibodies overnight at 4 °C. After washing with ice-cold PBS, sections were incubated with a goat anti-mouse IgG HRP (1:200, Vector Laboratories, BA-1000) secondary antibody for 2 h at 4 °C. The sections were exposed to an avidin–biotin peroxidase complex (PK-6200, VECTASTAIN Elite ABC kit, Vector Laboratories, Burlingame, CA, USA) for 1 h. Then, the peroxidase activity was color-developed with stable 3′-diaminobenzidine. The tissue slide was observed at 40× using a Nikon ECLIPSE E600 (Nikon, Japan) microscope.
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9

Dopaminergic Neuron Assessment in Mice

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The animal research in mice was conducted according to Institutional Animal Care and Use Committee (IACUC) Protocol AUP-0315-0016, approved by the IACUC of Methodist Hospital. All animal care procedures conformed to the Guide for the Care and Use of Laboratory Animals (National Research Council, National Academy Press, Washington DC 1996, USA). Gliomal cells used in laboratory studies do not meet the definition of human subject research per 45 CFR 46.102 since cells were isolated from deidentified patient tissues and have no identifiable private information.Initial toxicology model. 10 nude mice (NU-FoxnNu) were injected into the tail vein with 200 μL saline or 0.2 mg MP-MUS (in saline) on days 0, 12, and 23. The following day they were sacrificed and their major organs were fixed. After fixation, immunohistochemical slides of 10 μM thickness were prepared. Laterally sliced brain sections of all ten animals were investigated for the levels and the localization of tyrosine hydroxylase; the gold standard marker for the identification of dopaminergic neurons, which is the rate limiting enzyme in dopamine synthesis. A mouse monoclonal antibody (F-11, Santa Cruz, sc-25269) was used to identify dopaminergic neurons and nuclei were counter stained with hematoxylin.
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10

Assess Gmeb1 Knockdown Impact on mDA Neuron Survival

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To analyze whether knocking down Gmeb1 would affect mDA neuron survival, 20 µm midbrain slices from Dat-Cre mice injected with either a 1:1 mixture of shGmeb1 virus and DIO-mCherry virus, or shScramble virus and DIO-mCherry virus. Midbrain slices were first immunolabeled with rabbit anti-mCherry (1:500, ab167453, Abcam) and mouse anti-Th (1:500, SC-25269, Santa Cruz) antibodies, followed by TUNEL assay, using the Click-iT Plus TUNEL Assay for In Situ Apoptosis Detection kit-Alexa Fluor 647 dye (Thermo Fisher C10619). As a positive control, midbrain slices were pre-treated with DNase-1 (1 unit/50 µl), which generated positive TUNEL signals by inducing DNA double strand breaks.
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