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Glass bottom μ dishes

Manufactured by Ibidi
Sourced in Germany

Glass bottom μ-dishes are specialized cell culture dishes designed for microscopy applications. They feature a thin glass bottom that allows for high-quality imaging and analysis of cells in culture. The dishes provide a suitable environment for cell attachment, growth, and observation under a microscope.

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5 protocols using glass bottom μ dishes

1

Culture and Transfection of Rat Cortical Neurons

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Cortical neurons were obtained from the cortical lobes of E18 Sprague-Dawley rat embryos according to previously described procedures [19 (link)]. Neurons were resuspended in B27 Neurobasal medium plus 10% FBS and then seeded onto poly-L-ornithine-coated 48-well plates or glass coverslips (12 mm in diameter) at 1.5 × 105 cells per well. For confocal single-cell imaging experiments, cells were plated onto glass-bottom μ-dishes (Ibidi GmbH, Germany). The medium was replaced by serum-free, B27-supplemented Neurobasal medium 24 hours later. The cultures were essentially free of astrocytes and microglia and were maintained at 37°C and 5% CO2 as was previously described [25 (link), 26 (link)].
For transfection of cells, 4 × 106 rat neurons were transfected in suspension before plating with 3 μg of cDNA using the Rat Neuron Nucleofector kit (Lonza, Switzerland) according to the manufacturer instructions and plated and maintained as described above. Cultures were used at 8–9 days in vitro.
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2

Isolation and Transfection of Rat Cortical Neurons

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Cortical neurons were obtained from the cortical lobes of E18 Sprague–Dawley rat embryos according to previously described procedures.38 (link), 39 (link) Neurons were resuspended in B27 Neurobasal medium plus 10% FBS and then seeded onto poly-L-ornithine-coated 48-well plates or glass coverslips (12 mm in diameter) at 1.5 × 105 cells per well. For confocal single-cell imaging experiments, cells were plated onto glass-bottom μ-dishes (Ibidi GmbH, Planegg/Martinsried, Germany). The medium was replaced by serum-free, B27-supplemented Neurobasal medium 24 h later. The cultures were essentially free of astrocytes and microglia and were maintained at 37 °C and 5% CO2. Cultures were used at 8–9 days in vitro.
For transfection of cells, 4 × 106 rat neurons were transfected in suspension before plating with 3 μg of cDNA using Rat Neuron Nucleofector Kit (Lonza, Basel, Switzerland) according to the manufacturer instructions and plated and maintained as described above.
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3

Intracellular Calcium Measurement in Transfected Cells

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The intracellular calcium ion concentration, [Ca2+]i, was measured using a conventional Fura-2 technique as previously described.11 (link) After 48 h of transfection with pcDNA, wtSigR1 or mSigR1, NSC-34 and MCF-7 cells cultured in glass bottom μ-dishes (ibidi), were loaded with the membrane-permeable AM-form of Fura-2 (1.5 ng/μl; Invitrogen) in the presence of pluronic acid (25 %) for 30 min at 37 °C. Emitted fluorescence at 530 nm (detected using a PCO (Sensicam: pco.imaging), Kelheim, Germany) in response to alternate excitation at 340 nm and 380 nm (using the Polychrome V monochromator; TILL Photonics, Gräfelfing, Germany) was used to measure intracellular Ca2+ concentrations. Data were shown as emission ratios in response to 340 nm /380 nm excitation. Whole-cell calcium measurements of NSC-34 and MCF-7 cells transfected with pcDNA, wtSigR1 or mSigR1 were obtained at room temperature (23–25 °C). During the imaging procedure, cells were kept in a bathing solution containing 100 mM NaCl, 5.4 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES, 10 MES, 5.5 glucose and pH was adjusted to 7.4.
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4

Measuring Intracellular Calcium Dynamics in SigR1-Deficient Cells

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The intracellular calcium ion concentration, [Ca2+]i, was measured using a conventional Fura-2 technique.65 (link) After 48 h of SigR1 knockdown, NSC34 cells in glass bottom μ-dishes (ibidi, GmbH) were loaded with the membrane-permeable AM form of Fura-2 (1.5 ng/μl; Invitrogen) in the presence of pluronic acid (25%) for 30 min at 37 °C. Emitted fluorescence at 530 nm (detected using a Sensicam; pco.imaging, PCO AG, Kelheim, Germany) in response to alternate excitation at 340 and 380 nm (using the Polychrome V monochromator; TILL Photonics, FEI Munich GmbH, Germany) was used to measure intracellular Ca2+ concentrations. Data were expressed as emission ratios in response to 340 nm/380 nm excitation. Whole-cell calcium measurements from SigR1-deficient and control NSC34 cells were obtained at room temperature (23–25 °C). During imaging, cells were kept in a bathing solution containing 100 mM NaCl, 5.4 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES, 10 MES, 5.5 mM glucose and pH was adjusted to 7.4.
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5

Visualizing Lactobacillus-Gardnerella Interactions

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Ectocervical, endocervical, and vaginal epithelial cells were plated at 2.0 × 105 cells/dish on 35 mm high glass bottom μ-dishes (ibidi, Martinsried, Germany) coated with 0.1% gelatin for 24 h. Live L. crispatus and G. vaginalis were added to the cells and incubated 4–6 h prior to imaging. Differential interference contrast (DIC) images of our epithelial cell/bacteria co-culture with L. crispatus and G. vaginalis were taken using the Zeiss Axio Observer 7 widefield microscope using the 100× objective (Zeiss 100×/1.4 NA oil Plan-Apochromat) with ZEN Blue software (version 2.5).
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