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20 protocols using amygdalin

1

Amygdalin-Based Cyanogenesis Verification

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We purchased a commercially available cyanogenic glycoside, amygdalin (Sigma Aldrich, St. Louis, Missouri, USA), and created a standard curve using known quantities of amygdalin and corresponding HCN data in parts per million. The goal of this experiment was to verify that the HCN meter apparatus functioned as expected with known standard quantities, and to present a standard curve that experimenters can use in their studies. Cyanogenesis was accomplished endogenously by adding 100 μL of stock β‐glucosidase solution (10 mg/mL) to a series of 1‐mL amygdalin dilutions. This enzyme hydrolyzes the HCN molecule from the glucose chain, liberating it as a measurable gas (Fig. 1). The cyanogen‐glucosidase solution was mixed with a pipette for 5 s, and then immediately placed inside the plastic cup or the MP reaction chamber. HCN data collection followed the procedure described above.
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2

Osteogenic Differentiation Protocol for Stem Cells

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Minimum essential medium-α (α-MEM) and penicillin/streptomycin (P/S) were obtained from Gibco (Gaithersburg, MD, USA). The CCK-8 assay was obtained from Dojindo Molecular Technologies, Inc. (Kumamoto, Japan). Fetal bovine serum (FBS) was supplied by Atlas Biologicals (Fort Collins, CO, USA). Bicinchoninic acid (BCA) protein assay kit, β-glycerophosphate, ascorbic acid, dimethyl sulfoxide (DMSO) and amygdalin were obtained from Sigma Aldrich (St. Louis, MO, USA). Dulbecco’s phosphate-buffered saline was supplied by Welgene, Inc. (Daejeon, Republic of Korea). Anti-RUNX2, anti-BMP-2 and anti-SMAD1/5/9 antibodies were supplied by Abcam (Cambridge, UK). Anti-t-p38 and anti-p-p38 antibodies were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Secondary antibodies were supplied by Jackson ImmunoResearch Laboratories, Inc. (West Grove, PA, USA). PCR primers were supplied by Genotech (Daejeon, Republic of Korea). The SuperScript II Reverse transcription kit and SYBR-Green solution were purchased from Invitrogen (Carlsbad, CA, USA). Taq polymerase was purchased from Kapa Biosystems (Woburn, MA, USA). The OCN (cat. no: LS-F12230) and the OSN (cat. no: LS-F27540) ELISA kit was obtained from LSbio (Seattle, WA, USA).
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3

Analytical Extracts Preparation

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Five natural extracts, sanguinarine, betulinic acid, amygdalin, solanesol, and (-)-sparteine, of analytical grade (HPLC purity ≥98%) were purchased from Sigma. Each extract was prepared with DMSO to form a stock solution with a final concentration of 20 mM.
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4

Amygdalin Cytotoxicity and Cell Death

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Amygdalin (depicted in Fig. 1) was purchased from Sigma Aldrich (St. Louis, MO, USA) and dissolved in serum-free media. MTT (3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyl-tetrazolium bromide) was purchased from Sigma Aldrich (St. Louis, MO, USA). Z-VAD-FMK was purchased from R&D system, Inc. (Minneapolis, MN, USA).
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5

Quantification of Herbal Marker Compounds in GJBRHE

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Reference standards of amygdalin, coumarin, and cinnamic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). Albiflorin, cinnamaldehyde, paeoniflorin, and paeonol were obtained from Wako (Osaka, Japan). The purity of the seven reference standards was ≥98.0%. The chemical structures of the seven marker components are shown in Fig. 1a. High-performance liquid chromatography (HPLC)-grade reagents methanol, acetonitrile, and water to obtain the aqueous extract of GJBRHE were obtained from J. T. Baker (Phillipsburg, NJ, USA). Acetic acid was purchased from Merck (Darmstadt, Germany).

HPLC chromatograms of (a) the reference standard mixture and (b) GJBRHE: 230 nm (I), 254 nm (II), and 280 nm (III)

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6

Extraction and Quantification of Cyanogenic Glycosides

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Water, acetonitrile (ACN), methanol, ethanol and formic acid were purchased from Fisher Scientific (Fair Lawn, NJ, USA, HPLC grade). β-glucosidase enzymes (250 mg lyophilized powder ≥ 6U/mg), amygdalin (1 g, ≥99%), dhurrin (1 mg, ≥98%), prunasin (1 mg, ≥95%) and linamarin standards (1 mg, ≥95%), together with picric acid (100 g moisten with water ≥ 98%) and potassium cyanide (≥98%) were purchased from Sigma Aldrich Chemical Co. (St. Louis, MO, USA). Whatman no.1 filter paper, sodium carbonate, sodium hydroxide and pH 8 phosphate buffer (500 mL) were also purchased from Fisher Scientific (Fair Lawn, NJ, USA). Plastic backing and hobby glue (adhesive neutral pH) were purchased from the Mizzou Store (Columbia, MO, USA).
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7

Cytotoxicity and Oxidative Stress Assays

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Titanium oxide, acridine orange, MTT, rhodamine 123, amygdalin, copper II nitrate hexahydrate ethidium bromide, and antibiotic penicillin-streptomycin were purchased from Sigma-Aldrich chemical company (Merck & Co., Inc. USA). Gibco Dulbecco's Modified Eagle (DMEM) Medium and Fetal Bovine Serum (FBS) were obtained from Thermo Scientific, USA. We purchased a ROS detection kit from Nanjing KeyGen Biotech Co., Ltd.
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8

Amygdalin, Prunasin, and Sambunigrin Analysis

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Amygdalin (CAS number: 29883-15-6) was purchased from Sigma-Aldrich (St. Louis, MO). Prunasin (CAS number: 99-18-3) and sambunigrin (CAS number: 99-19-4) were supplied by LGC standards (Teddington, Middlesex, UK). Methanol HPLC grade was purchased from JT Baker (Deventer, Holland). Water was purified using a Milli-Q system from Millipore (Bedford, MA, USA).
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9

Quantification of Amygdalin in Almond Samples

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Prior to chemical analyses, the nuts were shelled manually and screened to remove bad seeds. All kernel samples were triturated in liquid nitrogen. The extraction of amygdalin used methanol (20 ml) as the solute, as well as 0.2–0.4 g of almond powder under an ultrasonic generator (500 W, 40 kHz) for 30 min. The supernatant was filtered through filter paper. Then, 1 ml was diluted with an equal volume of 20% methanol and filtered through a 0.22-μm microfiltration membrane for clarification.
High-performance liquid chromatography (HPLC) assays were carried out on a Waters 2650, 2487 UV detector, and a 4.6 × 250 mm C18 column (Waters Sunfire, MA, United States). The mobile phase used was CH3OH:H2O (20:80, v/v) under isocratic conditions at a flow rate of 1.0 ml/min. A 10-μl sample was injected for analysis. Detection was recorded at 210 nm. The amygdalin used as a standard was purchased from Sigma-Aldrich (MO, United States). The method produced a good separation chromatogram with excellent linearity (correlation r2 = 0.9999, Supplementary Figure 1) between the peak area and the concentration of amygdalin.
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10

Quantification of Bioactive Compounds

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Cinnamaldehyde (≥98.0%), cinnamic acid (≥98.0%), liquiritin (≥99.0%), 6-gingerol (≥98.0%), and glycyrrhizin (≥99.0%) were purchased from Wako (Osaka, Japan). Amygdalin and coumarin (both ≥99.0%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). liquiritin apioside (≥98.0%) was purchased from Shanghai Sunny Biotech (Shanghai, China) and ephedrine HCl (≥95.0%) was provided from Ministry of Food and Drug Safety. High-performance liquid chromatography (HPLC) grade, methanol, acetonitrile, and water were purchased from J. T. Baker (Phillipsburg, NJ, USA). Reagent grade, trifluoroacetic acid was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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