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38 protocols using protein loading buffer

1

Western Blot Protein Quantification Protocol

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RIPA Lysis and Extraction Buffer (Thermo Fisher Scientific) was applied for protein extraction from cells and tissues. The lysates were then mixed with protein loading buffer (Beyotime) and denatured in the boiling water bath for 10 min. The protein products were immediately used for the expression determination as previously described [29 (link)]. Antibodies were purchased from Cell Signaling Technology (CST, Boston, MA, USA): phosphorylated (Ser 9) glycogen synthase kinase 3 beta (p-GSK3β; #5558, 1:1000), GSK3β (#12456, 1:1000), β-catenin (#8480, 1:1000), E-cadherin (#3195, 1:1000), N-cadherin (#13116, 1:1000), reference gene GAPDH (#5174, 1:1000), and Anti-rabbit IgG, HRP-linked second antibody (#7074, 1:3000). Protein blotting could be emerged using SignalFire™ Elite ECL Reagent (CST) and protein quantification was performed by ImageLab software version 4.1 (Bio-Rad).
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2

Chicken Embryo Fibroblast Virus Infection Assay

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Chicken embryo fibroblasts was inoculated with viruses (MOI = 0.01) and incubated for 1 h at 37 °C. Cells were washed twice with phosphate buffered saline (PBS, pH 7.2). Thereafter, M199 medium containing 1% FBS was added and incubated for 12 h. Cells were washed once with pre-cooled PBS (4 °C) and lysed with 200 μL of RIPA Lysis Buffer (strong) (CWBIO, Beijing, China) individually on ice for 15–20 min. Supernatants were collected by centrifugation at 12000 r/min for 10 min at 4 °C and mixed with protein loading buffer (Beyotime Biotechnology, China). Following boiling at 100 °C for 6–8 min, samples were subjected to 12% SDS-PAGE, and transferred to a PVDF membrane. The membrane which was first blocked in TBST containing 5% non-fat powdered milk at 25 °C for 1 h was incubated with the primary antibody against the H5 14th peptide (diluted to 1:1000 with TBST), and then incubated with the secondary antibody (Goat Anti-Chicken IgY (H + L) HRP, Abcam, USA, diluted 1:5000 with TBST). Meanwhile, protein bands of β-actin were incubated successively with the primary antibody (Anti-β-actin monoclonal antibody, Sigma Company, USA) and secondary antibody (HRP labelled anti-mouse IgG goat polyclonal antibody, Abcam, USA). Protein bands were developed using a chemiluminescence imaging analysis system (Tanon 5200, Tanon Biotech, China).
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3

XXMD-C Modulates LPS-Induced Inflammation

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The experiment consisted of 5 groups, including the control group, LPS group (1 μg/mL LPS), low-dose group (1 μg/mL LPS + 1.25 mg/mL XXMD-C), medium-dose group (1 μg/mL LPS + 2.5 mg/mL XXMD-C), and high-dose group (1 μg/mL LPS + 5 mg/mL XXMD-C). BV-2 cells were cultured with or without XXMD-C and induced with LPS for 24 h. After washing twice with pre-cooled PBS, the cells were lysed with 150 μL RIPA lysis buffer (G2002, servicebio, China) on ice for 30 min. The lysate was collected in a 1.5 mL EP tube using a clean cell scraper and centrifuged at 13,400 g at 4°C to obtain the supernatant, and the protein concentration of each group was determined according to the instructions of the BCA kit. Proteins were denatured by adding protein loading buffer (070121211027, Beyotime, China) and boiling for 5 min at 100°C. The proteins were then separated for subsequent gel electrophoresis. The samples were subjected to 10% SDS-PAGE electrophoresis, and then transferred onto a polyvinylidene fluoride (PVDF) membrane in ice bath. The PVDF membrane was blocked with 5% skimmed milk at room temperature for 1.5 h and incubated overnight in the primary antibody solution. Finally, the PVDF membrane was incubated in the secondary antibody solution for 1 h. After washing, the protein bands were visualized using ECL solution for 1–2 min and analyzed for the gray value.
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4

Western Blot Protein Analysis Protocol

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The cell pellet was resuspended in lysis buffer, followed by centrifugation. The supernatant containing the extracted proteins, was collected. Protein concentrations were determined using the BCA Protein Assay Kit (#P0012S, Beyotime Biotechnology). Equal amounts of protein lysate (30 μg) were denatured using protein loading buffer (#P0015F, Beyotime Biotechnology). The denatured proteins were separated by SDS-PAGE, and transferred to 0.45 μm PVDF membranes (#IPVP00010, Millipore). The membrane was blocked for 1 hour at room temperature using blocking buffer (5% nonfat milk in TBST) while gently shaking. The blocked membrane was incubated overnight at 4 °C with primary antibodies diluted in blocking buffer, under gentle rotation. Post-incubation, the membrane was washed five times for 5 minutes each with TBST. The membrane was then incubated with HRP-conjugated secondary antibody diluted in blocking buffer for 1 hour at room temperature on a rotor. Afterwards, the membrane was washed five times for 5 minutes each using TBST. Finally, the membrane was developed using Omni-ECL Western Blotting Substrate (#SQ202L, Epizyme) or Omni-ECL Femto Maximum Sensitivity Substrate (#SQ201, Epizyme). The developed blot was imaged using the ChemiDoc Imaging System (Bio-Rad). The specific antibodies used in this study are listed in Supplementary Table 4.
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5

Protein Extraction and Western Blot

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Protein extraction was performed using a lysis buffer supplemented with protease inhibitor (Beyotime, Wuhan, China) for 20 min. After centrifugation at 4 °C for 10 min at 12,000× g, the supernatant was collected. The protein concentration was quantified using the BCA Kit (Thermo Scientific, Wilmington, MA, USA, 23227). Afterward, the protein was mixed with protein loading buffer (Beyotime, China) and heated at 100 °C for 15 min. Equivalent amounts of protein samples were then prepared in SDS sample buffer, followed by separation through 10% SDS-PAGE and a subsequent transfer onto polyvinylidene difluoride membranes. Following blocking with blocking buffer (Beyotime, Wuhan, China), primary antibodies targeting CLEC4G (1:1000, Thermo Scientific, Wilmington, MA, USA, PA5-53116) were used to probe the membranes, followed by incubation with secondary antibody (Bioworld, Beijing, China) at a dilution ratio of 1:5000. Mouse β-tubulin levels served as a loading control, using a specific antibody (BS1842, Bioworld, Beijing, China) at a dilution ratio of 1:1000. ImageJ software was used to measure the intensity of the bands.
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6

Protein Expression Analysis in Human Follicular Stem Cells

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After transfected HFSCs were incubated for 48 h, the total cell protein was extracted and quantified with a BCA kit. The extracted protein samples were mixed with protein loading buffer (Beyotime, Shanghai, China) then heated in a boiling water bath for 5 min. The samples (10 μL per well) were loaded onto SDS-PAGE gels and subjected to electrophoresis followed by electrophoretic transfer to nitrocellulose membranes. For this transfer, the current was set to 250 mA, and the run time was typically 90 min, but the run time was 120 min for experiments involving detection of MTOR or p-MTOR. The membranes were blocked with 5% BSA for 1 h and incubated for 12 h with primary antibodies. The membranes were washed 3 times for 5 min with TBST buffer then were incubated with secondary antibody for 1 h and washed with TBST. Band densities were analyzed with Image J software. The rabbit primary antibodies used in this study were: GAPDH (1:1000, AC027, ABclonal), PIK3R3 (1:500, A17112, ABclonal), AKT (1:500, bs-0115R, Bioss), p-AKT (1:500, bs-2720R, Bioss), MTOR (1:500, A2445, ABclonal), and p-MTOR (1:500, P0094, ABclonal). The secondary antibody was horseradish peroxidase-conjugated goat anti-rabbit IgG (1:2000, ab97051, ABcam).
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7

Protein Extraction and Analysis

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The adherent cells were harvested in RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) on ice. The lysed cells were scraped and transferred to 1.5 mL Eppendorf tubes. After 10 min incubated on ice, centrifuge at 4 °C at 12,000 rpm for 15 min. Gently absorb the supernate and transfer it to a newly pre-cooled centrifuge tube. Total protein concentration was determined by bicinchoninic acid (BCA) protein assay kit (Beyotime Biotechnology, Shanghai, China). The protein loading buffer (Beyotime Biotechnology, Shanghai, China) was then added and heated in a boiling water bath at 100 °C for 5 min to denature the protein. A protein sample of 30 μg was isolated by SDS-PAGE adhesive, and membrane transfer was conducted through polyvinylidene fluoride (PVDF, Millipore, Boston, MA, USA) membrane. The membrane was sealed with 5% skim milk at normal temperature for 2 h and then incubated with specific primary antibody at 4 °C overnight. The affinity purified Goat Anti-Rabbit Mouse IgG antibody (Abmart, Shanghai, China) was then used to incubate the membrane at room temperature for 1 h The protein bands were mixed with ECL solvent, and images were collected with the enhanced chemiluminescence (Thermo Fisher Scientific, Waltham, MA, USA).
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8

Evaluating Cellular Signaling Pathways

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Cells at a density of 3 × 105 cells/well were incubated overnight in a 6-well plate. After incubation with different drugs for 24 h, RIPA lysis buffer containing a protease inhibitor and phenylmethylsulfonyl fluoride (Beyotime BioTECH, Shanghai, China) was used for cell lysis on ice for 30 min. Protein concentration was determined using a BCA assay kit (Beyotime BioTECH). Protein samples were added to a protein-loading buffer (Beyotime BioTECH), boiled at 100°C for 8 min, separated using polyacrylamide gel electrophoresis (Epizyme, Shanghai, China), and transferred to a polyvinylidene fluoride membrane (Millipore, Massachusetts, USA). The membrane was sealed with a rapid blocking solution (Beyotime BioTECH) for 30 min at room temperature and then incubated with primary antibodies (diluted at 1 : 1000) at 4°C overnight. Antibodies against HIF-1α, VEGF, AKT, p-AKT, ERK, and p-ERK were purchased from CST (Boston, USA). Secondary antibodies labeled with horseradish peroxidase (KeyGEN BioTECH) were then incubated (diluted at 1 : 1500) at room temperature for 1 h. Finally, an ECL chromogenic solution (Beyotime BioTECH) was prepared and dropped on the membrane surface, which was exposed and photographed.
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9

Ubiquitination Assay of Diverse Proteins

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Purified E1, E2 (UBE2S), and Ub were purchased from Boston Biochemistry (Cambridge, MA, USA). ATP was purchased from Sigma (St. Louis, MO, USA). Purified HIST1H4H, LXN, RPL29, FAU, and AHSG were purchased from Abnova (Taiwan, China). TF and ALB were purchased from USBiological (Swampscott, MA, USA). Briefly, E1 (50 ng), E2 (200 ng), and Ub (5 µg), NDP/NUP (500 ng) were incubated with or without HIST1H4H (300 ng) in 50 µl reaction buffer (0.05 M Tris-HCl (pH 7.5), 2 mM ATP, 5 mM MgCl2, and 2 mM DTT) at 30°C for 30 min, and the assay was terminated with protein loading buffer (Beyotime) and boiled at 100°C for 10 min before subjecting to WB using the corresponding antibodies [anti-ALB (Arigo, #ARG54036), anti-TF (Abcam, #ab82411), anti-AHSG (Arigo, #ARG55425), anti-LXN (Abcam, #ab154744), anti-RPL29 (Abcam, #ab67196), and anti-FAU (Abcam, #ab63065), anti-Ub (CST, #3936 or #3933)].
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10

Quantification and Immunoblotting of Liver Proteins

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Total protein of liver tissue or cells was lysed by RIPA buffer (1 × , containing 10 mM PMSF protease inhibitor) for 30 min on ice. The protein concentration was quantified with BCA kit (Beyotime Biotech, Shanghai, China). Then, the sample with protein loading buffer (5 × , Beyotime) was performed with the SDS-PAGE and the gels were transferred to PVDF membranes (Millipore, USA). After blocking non-specific signal, the protein bands were incubated with primary antibodies in 4℃ overnights. Following antibodies were used: Alix (92880S, CST, USA), Tsg101(A2216, ABclonal, China), CD63 (Santa Cruz, sc5275, USA), Calnexin (A4846, ABclonal, China), α-SMA (ab124964, Abcam, USA), Collagen I (abs131984, Absin, China), glutamine synthetase (Glul) (A19641, ABclonal, China), Lamin B (66095-1-Ig, Proteintech, China) and GAPDH (2118S, CST, USA). Afterward, secondary antibodies were incubated at room temperature for 1 h and bands were visualized with ECL kit (Abcam, USA) by chemical image system (Amersham Imager 600, USA).
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