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7 protocols using anti phospho akt ser473 9271

1

Fibrosis Signaling Pathway Protocols

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PDE5-I vardenafil was obtained from Sequoia Research Products Ltd. (vardenafil citrate), Sigma Aldrich, or Selleckchem (vardenafil HCl). Nintedanib was obtained from Cayman Chemical. TGF-β1 was obtained from R&D Systems. The antibodies used in this study were as follows: fibronectin (Sigma Aldrich, F3648, St. Louis, MO, USA), CTGF (Santa Cruz Biotechnology, sc-14939, Dallas, TX, USA), αSMA (Sigma, A2547), p-SMAD3 (Cell Signaling 95205, Danvers, MA, USA), total SMAD3 (Abcam AB 28379), and GAPDH (Millipore MAB374). The secondary antibodies used for fibronectin ELISA included anti-rabbit IgG peroxidase (Sigma Aldrich, A0545) and anti-rabbit IgG-HRP (SantaCruz Biotechnology sc-2004). Additional antibodies for TGF-β1 signaling included the following: anti-mouse serpin E1/PAI-1 antibody (AF3828; R&D systems), anti-CTGF (sc-14939; SCBT), anti-αSMA (A2547; Sigma), anti-fibronectin (F3648, Sigma), anti-GAPDH (AB2302; Millipore, Burlington, MA, USA), anti-phospho-SMAD3 and anti-phospho-SMAD2 antibodies generated in our laboratory, anti-SMAD2 (ab63576; Abcam, Cambridge, UK), anti-SMAD3 (ab28379; Abcam), anti-phospho-AKT (Ser473; 9271, Cell Signaling), anti-phospho-AKT (T308; 4056, Cell Signaling), anti-phospho S6K (Thr389, 9234, Cell Signaling), anti-Akt (9272, Cell Signaling), and anti-S6K (9202, Cell Signaling).
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2

Western Blot Analysis of Phosphorylated Proteins

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Cells were lysed in RIPA buffer, separated by SDS–PAGE and transferred to nitrocellulose membranes following standard protocols. The membranes were incubated overnight with the following primary antibodies: anti-phospho-Src (Tyr416) (2101, 1:1000), anti-phospho-AKT (Ser473) (9271; 1:1000) and anti-phospho-SMAD3 (Ser423/425) (9520, 1:1000) (Cell Signalling Technology Boston, USA); anti–Tubulin (TU-02, 1:1000), and anti–CDK4 (c-22; 1:1000) (Santa Cruz Biotechnology, Inc., CA, USA). Blots were incubated with HRP-conjugated anti-rabbit and anti-mouse secondary antibodies (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Immunoreactivity was detected by Enhanced Chemiluminescence reaction (WESTAR NOVA 2011, Cyanagen, Bologna, Italy) following the manufacturer’s instructions.
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3

Signaling Pathway Analysis of DAT

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The antibodies used in this study include: anti-APPL1 (#3858), anti-STAT3 (#9139), anti-phospho-STAT3 Try705 (#9145), anti-Akt (#4691), anti-phospho-Akt Ser473 (#9271), anti-Erk (#4695), and anti-phospho-Erk Thr202/Tyr204 (#4370) antibodies, Cell Signaling Technology (Beverly, MA, USA); anti-phospho -(Ser/Thr) (ab17464), anti-TRAF6 (ab94720), anti-ubiquitin (linkage-specific K63) (ab179434), and anti-ubiquitin (linkage-specific K48) (ab190061) antibodies, Abcam Inc. (Cambridge, MA, USA). Diallyl trisulfide (DAT, SMB00289) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT, M2128) were from Sigma-Aldrich (St. Louis, MO, USA). Protein A-Sepharose beads was purchased from Amersham-Pharmacia Biotech (Piscataway, NJ, USA).
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4

Protein Expression Analysis via Western Blot

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Western blot analyses were performed as previously described [42 (link)]. Antibodies used were anti-Fra-1 (R-20; sc-605), anti-c-Jun (H-79; sc-1694), anti-p-c-Jun (KM-1; sc-822) and anti-ZEB2 (E-11; sc-271984) from Santa Cruz Biotechnology; anti-E-cadherin (610182), anti-N-cadherin (610920), and anti-fibronectin (610077) from BD Biosciences; anti-β-actin from Sigma; anti-p-Fra-1 (Ser265; #3880), anti-Akt #9272, anti-phospho-Akt (Ser473; #9271), anti-ERK, and anti-phospho-ERK were from Cell Signaling Technology.
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5

Western Blot Analysis of Phospho-Akt

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Protein extracts from cells or tissues were prepared by homogenization in RIPA lysis buffer (Santa Cruz). Protein extracts were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto PVDF membrane (Millipore). After incubation with the indicated primary antibodies at 4 °C overnight, the blots were incubated with IR dye-coupled secondary antibodies (LI-COR) and visualized by the LI-COR Odyssey infrared imaging system. The anti-FLAG (F3165) and anti-β-actin (A1978) antibodies were from Sigma. The anti-phospho-Akt (Ser473) (9271) and anti-Akt (2920) antibodies were from Cell Signaling Technology. Full-length western blot images corresponding to the data presented in main/supplementary figures are provided in Supplementary Figure 13.
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6

Metformin Pathway Regulation Assay

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Metformin was obtained from Cayman Chemical (Ann Arbor, MI, USA). Anti-phospho (Ser473) Akt (#9271) and total Akt (#9272) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against GLUT4 (sc-7938), p-IRS1 (Tyr632) (sc-17196), IRS1 (sc-559), p-PI3K (Tyr508) (sc-12929), PI3K (sc-7174), PGC1α (sc-13067), PPARα (sc-9000), UCP1 (sc-6529), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (sc-365062) were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). FGF21 (ab64857) was purchased from Abcam (Cambridge, UK).
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7

Antibody Validation and Gene Expression Profiling

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We used the following primary antibodies as follows: anti-Akt (9272, Cell Signaling) at 1:1000; anti-phospho(Ser473)-Akt (9271, Cell Signaling) at 1:1000; anti-cFos (PC38, Calbiochem) at 1:10000; anti-Darpp32 (AB10518, Millipore) at 1:2500; anti-ERα (06–935, Millipore) at 1:500; anti-Parvalbumin (PVG214, Swant) at 1:5000. In the immunostaining procedure, we used secondary antibodies anti-rabbit IgG and anti-goat IgG conjugated with Alexa Fluor 488 or Alexa Fluor 568 at 1:1000 (Invitrogen), AffiniPure Fab Fragment Goat Anti-rabbit IgG (H+L) (111-007-003, Jackson Laboratories). In the Western blot protocol, we used HRP-conjugated secondary antibodies anti-rabbit IgG (31460, Thermo Scientific) and anti-mouse IgG (NA931V, GE Healthcare) at 1:10000. The specificity of each antibody used in this study has been extensively tested by other groups and showed specific and expected staining in our hands.
For quantitative PCR, we used the following TaqMan probes (from Thermofisher): Gdnf1-2 (Gdnf exons 1 to 2), Mm00599849_m1; Pvalb (parvalbumin), Mm00443100_m1; Actb (βActin), Mm00443100_m1; Gapdh, Mm99999915_g1; Hmbs, Mm00660262_g1.
17β-estradiol (E8875, Sigma) was used to make up the SILASTIC implants, and β-estradiol 3-benzoate (E-8515, Sigma) for subcutaneous injection.
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