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Hifi dna assembly cloning system

Manufactured by New England Biolabs

The HiFi DNA Assembly Cloning System is a high-fidelity, seamless DNA assembly method that enables efficient construction of recombinant DNA molecules. The system utilizes a proprietary enzyme mix to facilitate the assembly of multiple DNA fragments in a single reaction. This product allows for the rapid and accurate generation of customized DNA constructs.

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2 protocols using hifi dna assembly cloning system

1

Generating Calcium Channel Constructs for Functional Studies

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The cDNAs used were Cav1.4 (GenBank: A930034B14), β2a (GenBank: NM_053851), β2X13 (GenBank: KJ789960), and α2δ−4 (GenBank: NM_172364) in pcDNA3.1 (Lee et al., 2015 (link)). To create the Cav1.4 cDNA with the G369i mutation, a codon insertion corresponding to the glycine insertion at residue G369 was generated with the HiFi DNA Assembly Cloning System (New England Biolabs) using Cav1.4 cDNA as the PCR template and the primers a1FbegNotF: 5'-TATATGCGGCCGCCCACCATGGATTAC-3’, Fr1G369insR: 5'-CTTAGGACACCTCCAAGCACAAGGTTGAGG-3’, Fr2G369insF: 5'-TTGGAGGTGTCCTAAGCGGGGAGTTC-3’, a1FBSrGIr: 5'-TTTAGGCAGCGTGTACAGCTAGCCATGGTCC-3’. All constructs were verified by DNA sequencing before use. Human embryonic kidney 293 T (HEK293T) cells (American Type Culture Collection, Manassas, Virginia) were cultured in Dulbecco’s Modified Eagle’s Medium (Thermo Fisher Scientific, Waltham, MA) with 10% FBS (VWR) at 37°C in 5% CO2. At 70–80% confluence, the cells were co-transfected with cDNAs encoding mouse Cav1.4 (1.8 μg) β2X13 (0.6 μg), α2δ−4 (0.6 μg), and enhanced GFP in pEGFP-C1 (0.1 μg) using FuGENE six transfection reagent (Promega, Madison, WI) according to the manufacturer’s protocol. Cells treated with the transfection mixture were incubated at 37°C for 24 hr. Cells were then incubated at 30°C for an additional 24 hr before beginning experiments.
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2

Calcium Channel Subunit Mutants

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The following cDNAs were used: Cav1.4 (GenBank no. AF201304), β2 × 13 (GenBank no. AF465485), and α2δ4 (GenBank no. NM_172364) in pcDNA3.1 (Lee et al., 2015 (link)); CaM deficient in Ca2+ binding to the N-terminal lobe (N lobe; CaM12), CaM deficient in Ca2+ binding to the C-terminal lobe (C lobe; CaM34), CaM deficient in Ca2+ binding to both the N lobe and C lobe (CaM1234; GenBank no. NM_017326.3) in pcDNA6V5-His (Lee et al., 2003 (link)); β2a (GenBank no. M80545.1). In Cav1.4Δex47, alanine substitutions at residues I1588A, Q1589A, D1590A, Y1591A, and F1592A (5A), and F1582A, Y1583A, and F1586A (3A), were generated with primers incorporating the mutations (5′-CTACGCCACATTTCTGGCCGCGGCCGCTGCCCGCAAATTCCGG-3′ for 5A, 5′-GTCACCGTGGGCAAAGCCGCCGCCACAGCTCTGATCCAGGACTATTTCCGC-3′ for 3A, respectively) using the QuikChange Lightning Multi Site-directed Mutagenesis kit (Agilent) according to the manufacturer’s protocol. The 3A mutations were generated in K1591X-3A with the HiFi DNA Assembly Cloning System (New England Biolabs) using K1591X as a PCR template and a gBlock containing the 3A mutations (Integrated DNA Technologies). All constructs were verified by DNA sequencing before use.
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