The largest database of trusted experimental protocols

19 protocols using calcein blue

1

Cytotoxicity and Apoptosis Assays for Valproic Acid

Check if the same lab product or an alternative is used in the 5 most similar protocols
All chemicals and solvents were purchased from commercial sources and were used as received, unless otherwise noted. Valproic acid, β-cyclodextrin, MTT (3-[4,5-dimethylthiazol-2-yl]-2,5- diphenyltetrazolium bromide; thiazolyl blue), cetyltrimethyl ammonium bromide (CTAB), tetraethyl orthosilicate (TEOS), (3-aminopropyl)triethoxysilane (APTES), 3-iodopropyltrimethoxysilane (IPTMS), benzimidazole, toluene (anhydrous), fluorescein, 2′,7′-dichlorofluorescein diacetate (DCFDA), Hoechst 33258, calcein blue, and propidium iodide (PI) were obtained from Sigma (St. Louis, MO). Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), penicillin, and streptomycin were obtained from Gibco BRL (Grand Island, NY). Antibodies for P53, caspase-3, and PARP were obtained from Cell Signaling Technology (Danvers, MA). Monoclonal antibodies for Bcl-2 (50E3) and PARP (46D11) were purchased from Santa Cruz Biotech (Santa Cruz, CA). Monoclonal antibody for Bax (ab5714) was from Abcam (Cambridge, UK). Bicinchoninic acid (BCA) protein assay kit and ECL chemiluminescence system were obtained from Pierce (Rockford, IL) and GE Healthcare (Piscataway, NJ), respectively. Annexin V–fluorescein isothiocyanate (FITC) Apoptosis Analysis Kit (AO2001-02P-H) was purchased from Sungene Biotech (Tianjin, China).
+ Open protocol
+ Expand
2

Multicolor Zebrafish Skeletal and Organelle Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Zebrafish in vivo skeletal staining was incubated with 0.2% Calcein (Sigma, C0875) solution (pH 7.0) for 10 min or 0.2% Calcein blue (Sigma, M1255) solution (pH 7.0) for 1 h or 0.05% Alizarin red (Sigma, A5533) for 1 h and then washed with system water three times. Cell internal membranes labeled with vital dye BODIPY TR Methyl Ester (C34556, Invitrogen) as described by the manufacturer, the embryos were stained with 100 μM MED for 1 h, then wash three times with egg water. BODIPY TR Ceramide (D7540, Invitrogen) prominent labeling of the Golgi apparatus with 50 μM for 2 h. LysoTracker Green DND-26 (L7526, Invitrogen) was used to in vivo label acidic notochord vacuoles after 5–6 dpf, 50 μM stained for 1–2 h depending on acidification degree of notochord vacuoles. Zebrafish embryos were anesthetized in tricaine (Sigma) and mounted in 1% LMP agarose. Calcein staining embryos were imaged with a SteREO Discovery 20 microscope (Carl Zeiss). Other live staining embryos were imaged with a LSM880NLO confocal microscope with a ×20 water immersion objective (Carl Zeiss). Images collected every 10 min for time series live cell imaging of notochord development from 20 to 30 hpf.
+ Open protocol
+ Expand
3

Fluorescent Bone Labeling and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescent double labelling of bone was applied by injecting mice intraperitoneally with 15 mg/kg calcein (C0875, Sigma‐Aldrich) in 0.2% sodium bicarbonate 8 days and 2 days prior to sacrifice. After sacrifice, femurs were dissected, fixed with formalin, embedded in methyl methacrylate (MMA) and cut into 7 µm sections using a microtome with a tungsten steel D‐profile knife. Bone was counterstained using calcein blue (M1255, Sigma‐Aldrich), and sections were imaged using a Leica DM6B fluorescence microscope (Leica Microsystems). calceinHisto open‐source software (van 't Hof et al., 2017 (link)) was used to determine the MAR, mineralizing surface per bone surface (MS/BS) and BFR/BS of femoral trabecular bone using consistent thresholds and settings for all images, as determined by visual inspection.
+ Open protocol
+ Expand
4

Bone Mineralization Visualization via Fluorescent Dyes

Check if the same lab product or an alternative is used in the 5 most similar protocols
During the experimental follow-up, three different calcium binding fluorophores were administered, by subcutaneous injection, to follow bone apposition and mineralization over time, which are to be detected in histological sections. Injection of Calcein Green (25 mg/kg, Fluka, Sigma Aldrich, Germany) was performed at 2 weeks and Xylenol Orange (30 mg/kg, Fluka, Sigma Aldrich, Germany) at 4 weeks, and Calcein Blue (25 mg/kg, Fluka, Sigma Aldrich, Germany) was injected on the day before sacrifice.
After sacrifice and sampling for bone culture, tibiae were fixated in 4% formaldehyde/PBS for 4 weeks and embedded in polymethylmethacrylate (PMMA) (Technovit 9100, Hereaus-Kulzer, Germany). After polymerization, sections were stained according to Masson-Goldner (Carl Roth, Germany) and Gram (without a safranin counterstain) and subsequently 50 μm sections were obtained using a saw microtome (SP 1600, Leica, Germany). Sections were analysed and digitized by light microscopy (Axioscope A1, AxioVision LE release 4.8.2, Carl Zeiss, Germany). The localization of calcium binding fluorophores in the bony tissue was visualized by fluorescence microscopy (Leica DMRB, Leica IM50 version 1.2 release 19, Leica, Germany) on unstained PMMA sections. Acquired images were merged using Photoshop CS3 (Adobe Systems, USA) to generate overview images.
+ Open protocol
+ Expand
5

Fluorochrome Labeling for Bone Remodeling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals assigned to a 12-week implantation period received a series of four fluorochromes (SigmaAldrich; Munich, Germany) by subcutaneous injection with a 2-week interval, starting two weeks after implantation surgery: Calcein blue (product no. M1255, dose 30 mg/kg; week 2), calcein green (C0875, 10 mg/kg; week 4), alizarine complexone red (A3882, 25 mg/kg; week 6) and rolitetracycline yellow (R2253, 25 mg/kg; week 8). Before injection, the solutions were set to neutral pH (7.2–7.4), then filtered through a 0.22 sterile millipore filter, and finally checked for fluorescence.
+ Open protocol
+ Expand
6

Calcein Labeling for Bone Histomorphometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were intraperitoneally injected with 15 mg/kg of calcein dye (Sigma‐Aldrich) solution in Dulbecco's phosphate buffered saline on days −5 and −2 prior to harvest. Femurs were fixed, embedded in methyl methacrylate resin, and cut into 5‐μm sections. For dynamic histomorphometry, slides were counterstained with 1% Calcein Blue (Sigma‐Aldrich), and fluorescent intra‐label thickness was quantified. For histological assessment of the growth plate, slides were dual stained with Safranin O and Fast Green.
+ Open protocol
+ Expand
7

Quantifying CAR and SSTR2 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
To assess cell-surface expression of CAR and SSTR2, transduced cells were stained with FITC anti-c-myc antibody (Miltenyi Biotec, clone SH1-26E7.1.3) and APC anti-human SSTR2 antibody (R&D systems, clone 402038). T lymphocytes and sub-populations were identified using a cocktail of anti-human PE-Cy5 CD3, anti-human PE CD4 and anti-human FITC CD8 antibodies (Biolegend, clone UCHT1; RPA-T4; RPA-T8). Live cells were selected using calcein blue (Sigma-Aldrich) staining along with forward- and side-scatter gating. Flow cytometry was performed on a Gallios flow cytometer (Beckman Coulter, Inc.) and analyzed with FlowJo software (Tree Star, Inc.).
+ Open protocol
+ Expand
8

Multispectral Labeling of Bone Calcium Deposition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Additional samples from each group were labeled with calcein and calcein blue to evaluate new calcium deposition. Prior to MSC seeding, decellularized bone plugs were soaked in 30 μM calcein (Sigma, St. Louis, MO) for 48 hours to label any existing calcium and washed in PBS for an additional 48 hours to eliminate any unbound calcein. Constructs were generated with calcein-labeled bone plugs, cultured for four weeks, fixed, and stored in 70% ethanol for 48 hours. Samples were removed from ethanol and placed into 30 μM calcein blue (Sigma, St. Louis, MO) for 48 hours to label any new calcium deposition that occurred during culture and washed in 70% ethanol for 48 hours. Simultaneous second harmonic generation (SHG) microscopy and two-photon excited fluorescence (TFEP) of calcein labels was performed based on procedures described previously.[43 (link)] Images were obtained on Zeiss LSM 880 Indimo with Zeiss Axio Observer Z1 inverted stand using a 40×/1.2 C-Apochromat water immersion objective with SpectraPhysics Insight laser at 760nm and non-descanned detectors used for calcein and calcein blue detection. Additionally, acellular, calcein labeled bone plugs were imaged at 0 and 4 weeks to confirm no photobleaching was occurring during the culture period (Figure S3, S4).
+ Open protocol
+ Expand
9

Osteogenic Differentiation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Methylsulfonylmethane (MSM), Ascorbic acid, β-glycerophosphate, Calcein Blue, MTT assay kit, Alkaline phosphatase staining kit, Cystamine, and GAPDH antibody were purchased from Sigma (St. Louis, MO). The following antibodies were bought from the company indicated in parenthesis: Collagen alpha 1 (Col 1; Novus Biological; Littleton, CO); Osteopontin (OPN; Abcam, Cambridge, UK), Transglutaminase (TG2; Abcam, Cambridge, UK), Runt-related transcription factor 2 (RUNX2) and HRP conjugated (mouse or rabbit) secondary antibodies (Santa Cruz Biotechnology, Dallas, TX); Osterix (Millipore, MA, USA). Alizarin Red S (ARS) 2% staining solution was from LifeNet® Cell Technology (CM-0058; Fredrick, MD). Fluorochrome-conjugated secondary antibody Alexa Fluor 488 (#4412) and Alexa Fluor 555 (#8953) (Cell Signaling technology®, Danvers, USA) Super Signal West Pico Chemiluminescent substrate was bought from Thermo Fisher Scientific (Waltham, Massachusetts). Demineralized and mineralized bone particles were from LifeNet Health®(Virginia Beach, Virginia).
+ Open protocol
+ Expand
10

Quantifying Bone Remodeling Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
The rationales, protocols, and quantifications of bone remodeling imaging were detailed in our work published previously6 (link). In brief, two calcium-binding dyes were administered sequentially. The first calcium-binding dye (Dye 1, Calcein Blue, Sigma, 30 mg/kg) was administered intraperitoneally 48 h before imaging to label and track the change of bone fronts over the course of 2 days, which approximately represents one cycle of bone resorption. Calcein Blue was chosen to be spectrally compatible with Rhod-5N and AF488. Its effect was transient (Fig. 2d) and did not alter the serum calcium on the day of imaging as verified by the Arsenazo assay. The second calcium-binding dye to label all the bone fronts (Alizarin Red, 40 mg/kg) was injected on the day of imaging but after the acquisition of the Rhod5N/AF488 data so it does not interfere with the calcium measurement. As Dye 1 would be eroded if bone resorption has occurred, the Dye 1 to Dye 2 ratio in a single BM cavity (the concave endosteum) indicates the stage of bone remodelling during the 48 h period. We then defined bone cavities as (i) deposition type (D-type; dye 1:dye 2 > 75%); (ii) resorption type (R-type; dye 1:dye 2 < 25%), and (iii) mixed type (M-type; dye 1:dye 2 between 25 and 75%. For quantifying fractions of cavity types, 3D maps of calvaria were acquired and analyzed.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!