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5 protocols using cellytic mt lysis buffer

1

Protein Expression Analysis in Tumor Samples

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Cells were harvested and lysed in CelLyticMT lysis buffer (Sigma-Aldrich) after either 24 or 48 h of treatment, and total protein was separated by SDS-PAGE and transferred to the membranes and immunostained using antibodies specific to the indicated proteins. For in vivo pharmacodynamic studies, end of study flash-frozen tumors (4 h post-last dose) were fractured using a cryoPREP instrument (Covaris), and pulverized tissue was lysed in CelLyticMT lysis buffer (Sigma-Aldrich). Total protein was analyzed by Western blot analysis as described above. Protein expression was analyzed using standard practice and antibodies as follows: ERα, PR, E2F1, CCNE1, CCNE2, CCND1, total Rb, phospho-Rb S807/811, CDK2, CDK4, CDK6, Actin (Cell Signaling Technologies, Catalog #13258, #3153, #3742, #20808, #4132, #2978, #9309, #8516, #2546, #12790, #13331, #4970, respectively), phospho-p107, p107, phospho-p130, p130 (Abcam: ab111348, ab76255, ab168458, ab6545, respectively), GREB1 (Millipore, MAB562), and Vinculin (Sigma-Aldrich, #v9131). Protein expression was quantified using the AzureSpot software and normalized to the expression of the vinculin protein.
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2

Quantitative Western Blot Analysis of Mn-SOD

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Cell lysates were subjected to western blot analysis, as described previously (4 (link)). EPCs were lysed using CelLytic MT lysis buffer (Sigma-Aldrich) with protease inhibitor cocktail (100 µl protease inhibitor/10 ml lysis buffer; Sigma-Aldrich). The protein content was assayed by bicinchoninic acid assay (Pierce Biotechnology, Inc., Rockford, IL, USA). Proteins (20 µg) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and then transferred to a nitrocellulose membrane (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The membrane was incubated with a 1:1,000 dilution of primary antibody targeting Mn-SOD or GAPDH, followed by a 1:5,000 dilution of horseradish peroxidase-conjugated secondary antibody. Protein bands were visualized by electrochemiluminescence (ECL Prime Western Blotting Detection Reagent; cat no. RPN2232; GE Healthcare Life Sciences, Shanghai, China). The intensity (area × density) of the individual bands on the western blots was measured by densitometry (model GS-700 Imaging Densitometer; Bio-Rad Laboratories, Inc.). The background was subtracted from the calculated intensity.
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3

Protein Expression Analysis Protocol

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Protein was isolated using CelLytic MT lysis buffer (Sigma Chemicals, St. Louis, MO) and quantified by using a bicinchoninic acid (BCA) kit (Sigma Chemicals, St. Louis, MO). Protein (50μg from cell/tissue lysates) was separated by SDS-PAGE, transferred to nitrocellulose, and incubated with antibodies prepared with fish gelatin blocking buffer (0.5% fish gelatin, 1X PBS, 1 mg/ml casein and 15 mM NaN3). IgG-congugated AlexFluor fluorescent secondary antibodies (Invitrogen) were used with the Li-COR (Li-COR Biosciences) to visualize bands. Protein expression was normalized to total protein as determined by MemCode staining (Thermo Scientific). The primary CrAT antibody was a generous gift from the laboratory of Dr. Fausto Hegardt.
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4

Cytokine Profiling of Mouse Colon Tissue

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Mouse colon tissues were suspended in 400 uL CelLytic MT lysis buffer (Sigma-Aldrich, St. Louis, MO) with protease inhibitors (EMD Millipore, Billerica, MA) and homogenized at 50Hz for 2 minutes with a stainless steel bead using a TissueLyser LT (Qiagen, Germantown, MD). Homogenates were incubated on ice for 10 minutes prior to a 7 minute, 14,000 × g centrifugation at 4°C. Total protein concentration of the resulting supernatants was determined by colorimetric protein assay and aliquots were stored at -80°C. Cytokine concentrations (G-CSF, GM-CSF, IFNγ, IL-1α, IL-1β, IL-2, IL-4, IL-5, IL-6, IL-7, IL-9, IL-10, IL-12p40, IL-12p70, IL-13, IL-15, IL-17A, IP-10, KC, MCP-1, MIP-1α, MIP-1β, MIP-2, RANTES, TNFα) were determined by multiplex analysis using a Milliplex MAP Mouse Magnetic Bead Panel (EMD Millipore, Billerica, MA). IL-13 was not detected by Luminex assay and an ELISA was used (eBioscience, San Diego, CA). Tissue lysate concentrations were normalized to total protein concentrations.
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5

Whole Cell Lysis and Quantification

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Cells were lysed using CelLytic MT lysis buffer (Sigma Aldrich) along with the protease and phosphatase inhibitor cocktail as described elsewhere [41] . Proteins obtained were quantified using BCA reagent (Pierce). 80-100 µg for HeLa whole cell lysate and 100-120ug for Caco2 whole cell lysate from each experimental group were loaded into each well of 12.5% SDS-PAGE. Western blot transfer was performed in a semi-dry transfer apparatus Trans-Blot SD (BIORAD). Western immunoblots were developed using BCIP/ NBT (Merck) substrates against alkaline phosphatase tagged secondary antibodies.
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