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7 protocols using lp vortex mixer

1

MDSC Quantification in Hepatocellular Carcinoma

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We collected 4 mL of fasting peripheral venous blood from all HCC patients before GSM–TACE, 10 days after surgery, and 30 days after surgery using heparin anticoagulation tubes. We then added 100 μL whole blood to a dry blank tube, lysed it with 500 μL OptiLyse C Lysing Solution (Beckman Coulter Diagnostics, Brea, California, US), vortexed the solution, and incubated the lysed blood at room temperature for 15 min to assure lysis was complete. Then we added 2 mL phosphate-buffered saline (PBS), and we vortexed and centrifuged the mixture at 300 g for 5 min. After centrifugation, we aspirated the supernatant, resuspended the cell pellet in 500 μL PBS, added 5 μL each of CD14, CD11b, and HLA-DR antibodies, and mixed the solution low speed for 5 s. Finally, we analyzed the samples on a flow cytometer.
2.2.2 Antibodies and laboratory equipment: To determine MDSC frequency, we performed multicolor fluorescence-activated cell sorting analysis using Beckman Coulter CytExpert software version 1.1. We also used a DxFLEX Flow Cytometer (Beckman Coulter), a Labofuge 400R Centrifuge (Thermo Fisher Scientific, Waltham, Massachusetts, US), a LP Vortex Mixer(Thermo Fisher Waltham, Massachusetts, US), and the following anti-human monoclonal antibodies: CD11b-APC-Alexa Fluor 750, CD14-PC7, anti–HLA-DR-ECD, OptiLyse C solution, and PBS (all Beckman Coulter).
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2

Isolation and Characterization of Human CSF-Derived Extracellular Vesicles

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Human cerebrospinal fluid (CSF) specimen
Note: Postmortem CSF specimens (1.0mL, 37 years old female, PMI 9h, pre-screened for infectious diseases, no previous cycle of freezing and thawing) were obtained from University of Maryland Brain and Tissue Bank and stored at −80°C. For identification of 700 EV proteins using 1D-LC-MS/MS (Thermo Scientific Q-Exactive with Waters NanoAcquity UPLC), at least 500μL of human CSF is needed to collect EVs (1.6 × 1010 particles / mL). The sample volume should be empirically optimized for this purpose.
High-speed centrifuge (# 5720R Eppendorf)
Spin-X centrifuge tube filter (cellulose acetate membrane, pore size 0.22-μm) (# CLS8160 Millipore Sigma)
Spin-X centrifuge tube filter (cellulose acetate membrane, pore size 0.45-μm) (# CLS8162 Millipore Sigma)
Halt Protease and Phosphatase Inhibitor Cocktails (# PI78443 Thermo Fisher Scientific)
MagCapture Exosome Isolation kit (# 293–77601 FUJIFILM Wako Pure Chemical Corporation)
Note: This kit can be recovered a maximum of 1–2 × 1010 particles.
LoBind Microcentrifuge Tubes 1.5 mL (# 022–43-108–1 Eppendorf)
DynaMag™-2 Magnet (# 12321D Thermo Fisher Scientific)
LP Vortex Mixer (# 88880017 Thermo Fisher Scientific)
mySPIN™ 6 Mini Centrifugae (# 75004061 Thermo Fisher Scientific)
ProPette™ Electronic Pipette Controller (# 1191K61 Thomas Scientific)
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3

Enzymatic Degradation of Hibiscus Tea Tannins

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In order to degrade tannins of Hibiscus tea, a purified enzyme from the recently isolated Penicillium commune HS2 (Gene Bank accession number MT084558) was utilized. Following solid-state fermentation of the isolated fungal strain on potato peels, the extracellular enzyme was purified by ammonium sulfate precipitation, followed by gel electrophoresis of Sepharose 4-B as designated by Mostafa (2022) (link). The Hibiscus tea was initially prepared by boiling 2 g of Hibiscus calyx powder in 100 ml of distilled water for 5 min, followed by filtration. Using a vortex mixer (LP vortex mixer from Thermo Fisher Scientific, USA), Hibiscus tea was mixed with purified tannase (53.1 U/ml) and incubated at 45 °C for 3 h (till no more gallic acid was produced). Tea was heated to 100 °C to inactivate tannase before being stored at −20 °C until analysis. All physicochemical properties of treated and untreated tea at the same dilution were compared.
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4

Generating Monodisperse Emulsions Using Microfluidics

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Polydisperse emulsions were formed using a vortex mixer (LP Vortex Mixer, Thermo Scientific). 50 µl droplet generation oil and 25 µl prepared samples (LAMP mix and DNA samples) pipetted into a 0.2 ml PCR tube (PCR‐0208‐C & PCR‐2CP‐RT‐C, Axygen). Unless otherwise mentioned, the tube was vortexed at 3200 rpm for 15 s. The emulsified samples were then incubated at 63 °C for 45 min using a real‐time PCR instrument (QuantStudio 1, Thermo Fisher Scientific) for quality control during the amplification. Monodisperse emulsions were formed using a flow‐focusing microfluidic chip with the flow driven by a negative pressure (−21.33 kPa relative to 1 atm) at the outlet (Figure S4, Supporting Information). The diameters of the resultant droplets were 46.37 ± 1.64 µm (0.052 nl).
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5

Assessing Seizure Sensitivity in Drosophila

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The Bang Sensitivity Assay (BSA) was performed on the following genotypes: UAS-PnglRNAi; repo-GAL4, UAS-Ncc69RNAi; repo-GAL4, and UAS-PnglRNAi/+; UAS-Ncc69RNAi/repo-GAL4. Females 4–7 days old were assayed. Flies were not exposed to CO2 for 3 days prior to BSA testing. Flies were flipped into empty vials and allowed to rest for 2 hr. They were then vortexed on a Thermo Scientific LP Vortex Mixer for 10 s at maximum speed. The vortexed flies were filmed for 60 s. The video was used to score seizures at 5, 10, 30, and 60 s.
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6

Standardized Swabbing Technique for Microbial Surface Sampling

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The swabbing method, a modification of the classic stamp method, involves swabbing from a limited template (10 × 10 cm2) area with a sterile swab (PROBACT medical, Heywood, Lancashire, UK). The technique of swabbing was standardised with a zig-zag movement of the swab in 4 planes: vertical, horizontal, and two diagonal planes on the template [75 ]. The swab was transferred to a sterile extender and vortexed (3 × 5 s) (LP Vortex Mixer, Thermo Scientific, Waltham, MA, USA), and microbiological surface inoculation was performed. The limiting template was sterilised with a burner flame before each material collection. The characteristics of the analyses performed using the reference method are presented in Table 1.
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7

Plasma Sample Preparation for Analysis

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Protein precipitation was used to prepare the plasma samples. Then, 50 µL of the plasma samples, 5 µL of mixed IS working solution, and 150 µL of acetonitrile were vortex-mixed using a LP Vortex Mixer (Thermo scientific) for 2.0 min. The mixture was centrifuged at 13,000× g for 10 min; 100 µL of supernatant and 100 µL of 50% acetonitrile-water were added to a 1.5 mL centrifuge tube and centrifuged again. The supernatant was transferred to a 96-well plate for injection analysis.
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