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16 protocols using ab53032

1

Western Blot Analysis of Protein Expression

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Penis tissue, MCPs, and MCP-EVs were lysed in RIPA buffer (Sigma-Aldrich) supplemented with protease inhibitor cocktail Solution (Ca# P3100-010, GenDEPOT, Katy, TX, USA) and phosphatase inhibitors (Ca# P3200-005, GenDEPOT). An equal amount of protein (50 µg/lane) from these samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) on 8-15% gels and then transferred to polyvinylidene difluoride membranes. After blocking with 5% nonfat dry milk for 1 hour at room temperature, membranes were probed with antibodies against Hebp1 (Ca# NBP2-14977, 1:100; NOVUS Biologicals), claudin-1 (Ca# ab242370, 1:1000; Abcam), claudin-2 (Ca# ab53032, 1:1000; Abcam), claudin-3 (Ca# ab15102, 1:1000; Abcam), claudin-11 (Ca# 36-4500, 1:1000; Thermo Fisher Scientific), and/or β-actin (Ca# sc-47778, 1:5000; Santa Cruz Biotechnology Inc.) for 2 hours. After washing three times, signals were visualized using an ECL detection system (Ca# EBP-1073, Bionote Inc., Hwaseong-si, Gyeonggi-do, Korea). Results were quantified densitometrically using an image analysis system (Image J 1.34; NIH).
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2

Colon Tissue Protein Analysis via Western Blot

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Total protein was isolated from adjacent normal colon tissues and separated by SDS-PAGE (10%), then transferred onto polyvinylidene difluoride membranes (EMD Millipore, US), which were then blocked. The membrane was incubated with primary antibodies overnight at 4 °C and then with secondary antibody at room temperature for 1 h. Primary antibodies used were anti-Claudin-2 antibody (Abcam Cat# ab53032, RRID:AB_869174, 1:500), anti-ZO-1 tight junction protein antibody (Abcam Cat# ab96587, RRID:AB_10680012, 1:1000), anti-active-β-catenin (Millipore Cat# 05-665, RRID:AB_309887, 1:1000), LEF1(C12A5) rabbit mAb (Cell Signaling Technology Cat# 2230, RRID:AB_823558, 1:1000), c-Myc antibody (9E10) (Santa Cruz Biotechnology Cat# sc-40, RRID:AB_627268, 1:1000) and β-actin (13E5) rabbit mAb (Cell Signaling Technology Cat# 4970, RRID:AB_2223172, 1:1000).
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3

Western Blot Analysis of Rat Liver and Colon Proteins

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Total protein was extracted from the rat liver and colon with RIPA buffer. Protein concentration was determined via BCA assay. Equal amounts of protein and 5x SDS loading buffer were mixed and boiled for 5 min. Proteins (30 μg per lane) were separated via SDS-PAGE on a 10% gel and transferred onto polyvinylidene difluoride membranes (Zhongshan Jinqiao Biology and Technology Co., Ltd., Beijing, China). Membranes were blocked with 5% nonfat milk for 1 h at room temperature. The membranes were incubated with primary antibodies against Collagen I (3241980-1, Abcam), Collagen IV (AA06195689, Bioss), α-SMA (GR282976-35, Abcam), Claudin1 (ab15098, Abcam), Claudin2 (ab53032, Abcam), ZO1 (21773-1-AP, Proteintech Group, Inc), and β-actin overnight at 4°C, respectively. Following primary incubation, membranes were incubated with horseradish peroxidase-labeled goat antimouse or antirabbit immunoglobulin G secondary antibody (A0208, Beyotime Biotechnology) for 1 h at room temperature. Protein bands were visualized using an ECL Prime Western Blotting Detection Reagent (RPN2232SK, Shanghai Haoran Biotechnology Co., Ltd.).
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4

Claudin-2 Expression in Colonic Tissue

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After treatment, the mice in the study groups were sacrificed via euthanasia. The colonic tissues were dissected, isolated and washed with cold PBS. Then the samples were fixed with 4% paraformaldehyde. Embedded in paraffin, the samples were sliced into 5 μm sections. The sections were heated in the PBS in a microwave. After cooling down, the serum blocking solution was added to block the sections for half an hour at 37 °C. Then the sections were incubated with anti-Claudin-2 antibody(1:1000, #ab53032, Abcam, England) at 4 °C overnight and secondary antibody (#ab205718, Abcam) at 37 °C for one hour. After being washed with PBS, the sections were stained with diaminobenzidine for five minutes and hematoxylin for two minutes. Finally, the sections were observed under the microscope (Olympus Corporation).
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5

Western Blot Analysis of Cellular Markers

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IECs, and mouse and human tissue samples were lysed using RIPA lysis buffer containing protease inhibitors, sonicated and centrifuged. The protein concentration was determined by BCA protein assay (Thermoscientific). Equal concentrations proteins were resolved using 10% SDS-PAGE and transferred to PVDF membrane. The membrane was blocked using 5% Milk in TBS-T, probed with primary antibody, CRT (ab62196, Abcam), Claudin 1 (ab180158, Abcam), Claudin 2 (ab53032) and Actin (ab8227, Abcam), and corresponding HRP-conjugated antibodies. Densitometry was measured using ImageJ comparing CRT bands to Actin bands.
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6

Intestinal Membrane Protein Analysis

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Cytomembrane protein and total protein were extracted from jejunum, ileum, and IPEC-J2 cells, using a membrane and cytosol protein extraction kit (Beyotime) and RIPA Lysis Buffer (Beyotime) in accordance with the manufacturer's instructions. Cytomembrane protein was used to determine the relative protein levels of AQP3 (sc-20811, Santa Cruz, TX, USA), AQP4 (ab46182, Abcam, LON, UK), AQP8 (sc-14984, Santa Cruz), epithelial sodium channel alpha subunit (α-ENaC, ab65710, Abcam), sodium-hydrogen exchanger 3 (NHE3, sc-28757, Santa Cruz), Cl/HCO3 exchanger (DRA/PAT1, sc-161150, Santa Cruz), β-ENaC (14134-1-AP, Proteintech, CA, USA), and β-ATPase Na+/K+ antibody (ab254025, Abcam). Total protein was used to measure the relative protein levels of zonula occludens-1 (ZO-1, 21773-1-AP, Proteintech), occludin (ab31721, Abcam), E-cadherin (Proteintech), claudin-1 (#13995, Cell Signaling Technology, Boston, USA), claudin-2 (ab53032, Abcam), AMPKα1 (10929-2-AP, Proteintech), AMPKα2 (18167-1-AP, Proteintech), PGC-1α (ab106814, Abcam), target of rapamycin complex 2 (TORC2, 12497-1-AP, Proteintech), silent information regulator T1 (SIRT1,13161-1-AP, Proteintech), and β-actin (60008-1-Ig, Proteintech). These proteins were detected by the Western blotting technique as previously reported (Tan et al., 2010 (link)).
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7

Immunolocalization and Confocal Imaging of Tight Junction Proteins

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Immunolocalization and confocal imaging were performed as previously described16 (link). Briefly, T84 cells that were grown on glass coverslips or transwell membranes (0.33-cm2, 0.4 μM permeable polyester) were fixed with 4% paraformaldehyde, followed by permeabilization with 0.2% Triton X-100. The cells were then blocked using 5% serum, followed by exposure to a primary antibody as noted below followed by a tagged species-specific secondary antibody. Cells were then stained with DAPI (Invitrogen) diluted 1:25,000 in PBS. Cells were covered with ProLong gold antifade (Invitrogen). Immunolabeling was visualized with a Zeiss Axiovert 200 M microscope. Primary antibodies for CRT (ab62196, Abcam), ZO-1 (617300, Lifetech), Claudin 1 (ab15098, Abcam), Claudin 2 (ab53032, Abcam) were used. Actin was stained using rhodamine tagged phalloidin (R415, Thermo Fisher Scientific).
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8

Western Blot Analysis of Liver and Intestinal Proteins

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Liver and intestinal samples were homogenized in RIPA buffer added with protease and phosphatase inhibitors. Full centrifugation at low temperature (15 min at 12,000 g) to obtain supernatant, and the protein concentration was quantified by BCA kit (Epizyme, Shanghai, China), proteins electrophoresis using the 10% sodium dodecyl sulfate-polyacrylamide gel and transferred onto 0.45 μm PVDF membranes (Millipore, United States). Subsequently, the PVDF membranes were socked in 5% skim milk containing 140 mmol/L NaCl, 20 mmol/L Tris-HCl (pH 7.5), and 0.1% Tween 20°at room temperature for 60 min, and incubated with primary antibodies at 4°C overnight: FXR mouse monoclonal antibody (72105S, CST, United States), TGR5 rabbitpolyclonal antibody (72,608, Abcam, United States), ZO-1 (ab216880, Abcam, United States), Occludin (ab 216,327, Abcam, United States), Claudin 2 (ab53032, Abcam, United States), P-P65 rabbit monoclonal antibody (3031S, CST, United States), P65 rabbit monoclonal antibody (8242S, CST, United States), β-actin (Hua-an Biotech Inc., Hangzhou, China), and then incubated with horseradish peroxidase-conjugated secondary antibodies at room temperature for another 60 min. The protein bands were visualized by an ECL chemiluminescence detection kit (WBKLS0500, Millipore, United States) with an enhanced chemiluminescence system (Tanon 5200, Shanghai, China).
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9

Intestinal Protein Profiling and Analysis

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The total proteins of intestinal tissues were extracted by radioimmunoprecipitation assay protein lysis buffer (Invitrogen; Thermo Fisher Scientific, Inc., USA). A bisquinolinecarboxylic acid protein kit was used to measure the concentration of proteins. Then, 40 μg of protein from each sample was separated by 10% sodium salt-polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride membrane by the electric transfer method. Five percent skimmed milk powder was used blocking for 1 h. After incubation with primary and secondary antibodies, the protein bands were visualized by enhanced chemiluminescence. The primary antibodies were diluted at 1 : 1000 as follows: anti-LC3B (ab48394; Abcam, UK), anti-beclin 1 (ab210498; Abcam, UK), anti-p62 (ab109012; Abcam, UK), anti-ZO-1 (ab96587; Abcam, UK), anti-occludin (ab216327; Abcam, UK), anti-claudin-1 (ab180158; Abcam, UK), anti-claudin-2 (ab53032; Abcam, UK), anti-claudin-3 (ab52231; Abcam, UK), anti-Bcl-2 (ab182858; Abcam, UK), anti-Bax (ab32503; Abcam, UK), anti-cleaved Caspase-3 (ab49822; Abcam, UK), and anti-β-actin (ab8226; Abcam, UK). The grayscale value was analyzed by ImageJ.
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10

Western Blot Analysis of Inflammatory Markers

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Cells or colon tissue samples were lysed in RIPA buffer (Beyotime, Shanghai, China) supplemented with protease inhibitors for 30 min on ice. The homogenates were centrifuged at 11,000 rpm for 20 min at 4 °C. The total protein concentrations in the supernatants were quantified by the BCA assay (Thermo Fisher Scientific, Waltham, MA, USA). Protein samples with equal concentrations were separated in SDS-PAGE gels and transferred to PVDF membranes (Bio-Rad). After blocking with 5% BSA for 2 h, the membranes were incubated at 4 °C overnight with primary antibodies against the following target proteins: TNF-α (ABclonal, A11534, dilution 1:1000), IL-6 (ABclonal, A0286, dilution 1:1000), IL-1β (ABclonal, A16288, dilution 1:1000), COX2 (Abcam, ab79393, dilution 1:1000), iNOS (Abcam, ab178945, dilution 1:1000), β-Actin (Proteintech, CL594-66009, dilution 1:5000), GAPDH (Abways, AB0037, dilution 1:5000), Claudin-2 (Abcam, ab53032, dilution 1:1000), Claudin-4 (Abcam, ab15104, dilution 1:1000), Claudin-7 (Abcam, ab27487, dilution 1:1000), ZO-1 (Abcam, ab96587, dilution 1:1000), and Occludin (Abcam, ab216327, dilution 1:1000). After washing, the membranes were incubated with the corresponding secondary antibodies for 2 h at room temperature (RT). The immune complexes were detected with an ECL reagent (Thermo Fisher Scientific, Waltham, MA, USA).
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