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8 protocols using alexa fluor 555 labeled secondary antibody

1

Immunofluorescence and TUNEL Assay for HCC Cells

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HCC cells were seeded in glass bottom dishes. After cells attached to the bottom of the dishes, cells were fixed in 4% paraformaldehyde and permeabilized with 0.2% Triton X-100. Afterwards, the cells were incubated with blocking buffer (5% BSA in PBS, pH 7.4) for 30 min. Cells were incubated with the appropriate primary antibodies overnight at 4 °C. On the following day cells were incubated with Alexa Fluor 555-labeled secondary antibodies (Beyotime, Haimen, China) for 1 h and DAPI was used to mark nuclei. For the TUNEL assays, after cells were incubated with blocking buffer, the TUNEL reaction mixture (Roche, Pleasanton, CA, USA) was used to treat cells for 1 h at 37 °C in the dark place. Subsequently, cells were strained with DAPI for nuclei visualization. Apoptotic cells appeared as red-stained cells. The cells were observed and photographed under a fluorescence microscope (Olympus, Tokyo, Japan). Data are shown from a typical experiment performed in triplicate.
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2

Tenomodulin Immunofluorescence Staining

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Cells were fixed with a 4% paraformaldehyde solution for 15 min and washed for 5 min three times with PBS. The cells were then permeabilized and blocked with 0.2 % Triton X-100/PBS for 3 min, and then rinsed by PBS for 5 min three times. They were then blocked using 1% BSA/PBS for 1 h. Cells were incubated with primary antibodies anti-tenomodulin antibodies (dilution, 1: 200; Abcam, Cambridge, MA, USA) overnight at 4 °C, followed by Alexa Fluor 555-labeled secondary antibodies (dilution,1:500; Beyotime, Shanghai, China). Actin filaments and DNA were stained with Phalloidin-Tetramethylrhodamine Conjugate (Sigma-Aldrich, Darmstadt, Germany), and 500 nM DAPI (Beyotime, Shanghai, China), respectively. Images were captured with a Leica fluorescence microscope (Leica, Solms, Germany).
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3

Immunofluorescence Assay for Cytoskeletal and HMMR Evaluation

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Cells were transplanted into 6-well plates covered with circular coverslips in the bottom and allowed to attach overnight. After different treatment of PTUPB for 48 h, cells were fixed by 4% paraformaldehyde. For phalloidin staining of actin fibers, fixed cells were incubated with fluorescein isothiocyanate (FITC)-labeled phalloidin (Beyotime Institute of Biotechnology, Shanghai, China) for 60 min at room temperature and then mounted onto slides for observation after nuclei staining. For HMMR staining, fixed cells were probed with HMMR primary antibody (OriGene, Rockville, MD, USA) at 4°C overnight followed by incubation with Alexa Fluor 555-labeled secondary antibody (Beyotime Institute of Biotechnology, Shanghai, China) for 60 min at room temperature. Hoechst 33258 was used for staining nuclei. Cell samples were observed and pictures were taken by using a Zeiss Axio Scope.A1 microscope (Carl Zeiss, Oberkochen, Germany).
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4

Paraquat-Induced Oxidative Stress Protocols

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Paraquat, 2′, 7′- dichlorodihydrofluorescein diacetate (DCFH-DA), Hoechst 33342 was purchased from Sigma-Aldrich (St Louis, MO, USA). Dulbecco's Modified Eagle Medium (DMEM) used for AT-II cell culture was obtained from Gibco (Carlsbad, CA, USA). Cell counting kit-8 was from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Annexin V-FITC/propidium iodide (PI) apoptosis detection kit was obtained from Nanjing KeyGen Biotech Co., Ltd. (Nanjing, China). Mitochondrial division inhibitor 1 (Mdivi-1) and anti-Fis1 mAb was purchased from Enzo Life Sciences (Farmingdale, NY, USA). Ascorbic Acid was purchased from Biogot Technology (Nanjing, China). MitoTracker Green FM were provided by Molecular probes (Eugene, OR, USA). Anti-Drp1 mAb, anti-Opa1 mAb, anti-Fis1 mAb, anti-Mfn2 mAb and anti-β-actin mAb used in this study were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-Cyt C antibody, anti-Cox IV antibody and Alexa Fluor 555 labeled secondary antibody were provided by Beyotime Co., Ltd. (Shanghai, China).
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5

Immunofluorescent Staining of Lung Tissue

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Five-micron sections from 10% formalin paraffin-fixed lung tissues were blocked and incubated with von willebrand factor antibody (Abcam, USA) followed by Alexa Fluor 555-labeled secondary antibody (Beyotime Inc., China). PMVECs were fixed with 10% formalin for 30 min, permeability with 0.3% Triton X-100 for 10 min and blocked with 10% goat serum for 1 h at room temperature. Cells were then incubated with phalloidin-rhodamine for 20 min for staining off-actin. DAPI was used for nuclear staining (Beyotime Inc., China). Micrographs were obtained with a fluorescent microscope (Olympus BX51, Japan).
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6

Brevilin A Regulates NF-κB Translocation

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RAW264.7 cells (1 × 105) adherent on the glass bottom dishes were pretreated with brevilin A (5 μM) or DMSO for 2 h, and following stimulated with or without LPS/IFNγ for 30 min. The cells were fixed with 4% paraformaldehyde for 15 min, permeabilized with 0.1% Triton X-100 for 10 min, and incubated with anti-p65 antibody (1:200) overnight at 4°C. Following incubation with Alexa Fluor 555-labeled secondary antibody (1:1000, Beyotime) and 4',6-diamidino-2-phenylindole (DAPI, 2.5 μg/ml), the cells were evaluated for the cellular localization of p65 using a confocal microscope (TCS SP8; Leica, Germany).
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7

Immunofluorescence Staining of Chondrocytes

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Following overnight culture in a 24-well plate, cells were fixed with 4% paraformaldehyde for 10 min and then treated with 0.2% Triton X-100 for 15 min. After blocking with 5% goat serum for 30 min, cells were incubated overnight at 4°C in a refrigerator with primary antibodies against type II collagen and SOX-9 primary (1:100). The following morning, cells were incubated with Alexa Fluor-555 labeled secondary antibody (Beyotime Institute of Biotechnology) for 2 h at room temperature, stained for 5 min at room temperature with DAPI (4′,6-diamidino-2-phenylindole) (Beyotime Institute of Biotechnology) and finally observed under a fluorescence microscope (Olympus Corporation, Tokyo, Japan).
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8

Collagen II Immunofluorescence Staining

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Cells were washed three times with PBS and fixed using 4% paraformaldehyde for 15 min. After that, cells were permeabilized with 0.05% Triton X-100 for 15 min and blocked with 5% bovine serum albumin (BSA) for 1 h at room temperature. Cells were then incubated with collagen II (1:200; Abcam) in 1% BSA overnight at 4°C. Alexa Fluor 555-labeled secondary antibody (Beyotime, China; excitation and emission wavelengths are 555 and 565 nm) was used to incubate cells at room temperature for 1 h. Nuclei were then stained with 4′,6-diamidino-2-phenylindole (DAPI; Sigma Aldrich, China) at room temperature for 10 min. Immunofluorescence were observed and images were collected using a fluorescence microscope (DM5500; Leica).
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