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6 protocols using d2s9r

1

Immunohistochemical Analysis of Tumor Macrophages

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Tumors were collected as previously described. Formalin immobilizes tumor tissues. Immunohistochemical analysis of the tumor tissue sections was performed using an F4/80 specific antibody (Cell Signaling Technology, D2S9R) [18 (link)]. In short, tissue sections were incubated in a 5 mM citric acid buffer (F4/80), incubated at 100 °C for 25 min (F4/80) to obtain antigenicity, and then incubated with F4/80 antibody for 1 h. The stained sections were observed under a microscope, and the images were systematically analyzed using Leica software.
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2

Histological Analysis of Immune Cells

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For detection of immune cells and phagocytes in capsule, histochemistry and immunohistochemistry (IHC) analysis were performed. The Periodic Acid Schiff (PAS) staining was performed to identify the leukocytes-granulocytes infiltrated in capsular tissue. Toluidine blue (1%, pH 4.0) staining was performed to identify mast cells in tissue sections through metachromatically reaction of heparin and sulfated glycosaminoglycan granules. For IHC detection of phagocytes, histological sections were submitted to reaction with the primary antibody F4/80 (rabbit monoclonal, 1:100, D2S9R, #70,076, Cell Signaling, Danvers, MA, USA). Slides were dewaxed, and antigens were retrieved in 10 mM citrate buffer (pH 6.0, at 98 °C). Endogen peroxidases blocked in 10% H2O2, and nonspecific proteins were blocked using 5% skimmed milk. After, they were incubated overnight with the primary antibodies. An incubation with polymer (Novolink Max Polymer DS (1250), Leica) was performed, and detection was performed with 3–30′-diaminobenzidine tetrahydrochloride solution (DAB) and counter-stained with Harris Hematoxylin, staining and inspected under a light microscope (Olympus BX50, Olympus Corporation, Center Valley, PA, USA). Images were captured using Olympus cellSens Standard 1.18 software (Olympus Corporation, Center Valley, PA, USA).
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3

Immunohistochemical Analysis of Macrophages

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Paraffin slides were used for immunohistochemistry (IHC) for F4/80 (a marker of macrophages). First, the paraffin slides were baked at 60 °C overnight and then deparaffinized by xylene and rehydrated with ethanol. Sodium citrate antigen-retrieval solution (Beyotime, Shanghai, China) was used for retrieval with a low-level microwave. Hydrogen peroxide (1.5%) in methanol was used to block endogenous peroxidase activity, and Dako protein-blocking reagent (DakoCytomation Corporation, Carpinteria, CA, USA) was used to block the irrelevant antigen. The primary Ab F4/80 (D2S9R, working concentration of 1:500, Cell Signaling Technology, Danvers, MA, USA) was incubated overnight at 4 °C. For isotype control slides, normal rabbit IgG (Calbiochem, San Diego, CA, USA) was used as the primary Ab. A Dako Real Detection System Alkaline Phosphatase Kit (K5005, Dako) and chromogen (Fast Red) were used for immunostaining. Hematoxylin was used to counterstain, and the slides were then dehydrated.
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4

Immunohistochemical Analysis of Macrophages

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Samples were fixed with 4% paraformaldehyde and embedded in paraffin. They were sliced into 4.5-μm-thin sections and stained with H&E, following a standard protocol. For IHC staining, anti-F4/80 antibody (D2S9R, Cell Signaling Technology) was used. The samples were then washed and blocked with 2.5% horse serum for 1 h. After another washing with PBS + 0.05% Tween 20 incubation was performed with a 1:500 dilution of primary anti-F4/80 overnight in a 4°C chamber. Samples were washed and incubated with secondary antibody (ImmPRESS, Vector Laboratories) for 1 h at 24°C. Finally, they were developed using a DAB kit (Vector Laboratories), according to the manufacturer’s protocols. H&E and IHC samples were visualized using a Pannoramic Scanner (3DHISTECH).
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5

Multiplex IHC for Immune Profiling

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Multiplex immunohistochemical staining was performed following the protocol of the Opal Polaris 7-Color Manual IHC Kit (Akoya Bioscience, NEL861001KT). Antibodies against mouse CD8α (1:800, D4W2Z), F4/80 (1:200, D2S9R) and GFP (1:400, D5.1) were purchased from Cell Signaling Technology. Antibodies against mouse PD-1 (1:100, EPR20665), and CK19 (1:1500, EP1580Y) were purchased from Abcam. Slides were imaged, whole slides were scanned using a Vectra Polaris Automated Quantitative Pathology Imaging System (Akoya Biosciences), and multispectral images were acquired using Phenochart software, version 1.0.12 (Akoya Biosciences), to unmix and remove autofluorescence. The distances between CD8+ cells andCK19+ cells were calculated by HALO software (Indica Labs).
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6

Histopathological Analysis of Lung Tissue

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Lungs were harvested and the left lungs were used for organ burden (see below) and right lungs were inflated with 10% neutral buffered formalin (Fisher Scientific) and left submerged in formalin for at least 24 h. The right lungs were then dissected into the four different lobes and placed in cassettes submerged in 70% ethanol. The four right lobes for each lung were paraffin embedded and sectioned by the DHMC pathology core. The four lobe sections for each right lung arranged side-by-side on a slide were then stained with hematoxylin and eosin (H&E) for histopathology or were stained to detect specific cell subsets with antibodies suitable for IHC, Ly6G (ab238132; abcam), CD11b (ab133357; abcam), and F4/80 (D2S9R) (number 70076; Cell Signaling), followed by diaminobenzidine (DAB)-conjugated secondary antibody. Alternatively, sections were stained with BcAU1054 antisera and DAB-conjugated secondary antibody to detect the bacteria.
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