The largest database of trusted experimental protocols

9 protocols using ampkα1

1

Western Blot Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western-blot assays were used to analyze protein expression [44 (link)]. The following antibodies were used: DDX17 (Proteintech, Cat. 19910-1-AP), MAGEA6 (SAB, Cat. 43096), p62 (Proteintech, Cat. 18420-1-AP), LC3 (Sigma, Cat. L8918), β-actin (Proteintech, Cat. 81115-1-RR), GAPDH (Proteintech, Cat. 10494-1-AP), AMPKα1 (Abcam, Cat. ab32047), paxillin (Proteintech, Cat. 10029-1-Ig), GFP (Proteintech, Cat. 66002-1-Ig), MYL9 (Abcam, Cat. ab191393) and the HRP-conjugated goat anti-rabbit/mouse secondary antibody (Jackson ImmunoResearch, PA, USA).
+ Open protocol
+ Expand
2

Protein Expression Analysis in Fibroblasts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues or fibroblasts were lysed with RIPA buffer (#WB009, Heart) containing 1% aprotinin, 1% activated Na3VO4 and 1% PMSF on ice. The protein concentration was determined according to the instructions of the the PierceTM BCA Protein Assay Kit (#NCI3225CH, Thermo Fisher Scientific). Total protein of 30μg was loaded onto the 10% SDS-polyacrylamide gel, separated by electrophoresis, and then transferred to the PVDF membrane (Millipore, Boston). Membranes were blocked with 5% skim milk for 2h at room temperature and incubated with AdipoR1 (#ab126611), Col1 (#ab138492), α-SMA (#ab124964), CCND1 (#ab16663), CCNE1 (#ab33911), SIRT1 (#ab189494), YAP (#ab52771), H2A (#ab177308), α-tubulin (#ab7291), AMPKα1 (#ab32047) (Abcam), AdipoR2 (#sc-514045, Santa Cruz), P-AMPKα (Thr172) (#2535, Cell signaling Technology), C/EBPβ (# PA5-27244, Thermo Scientific) or TEAD4 (#sc-101184, Santa Cruz) antibodies overnight at 4°C. The next day, membranes were incubated with HRP-conjugated goat anti-rabbit IgG (#A0208,1:2000) or HRP-conjugated goat anti-mouse IgG (#A0216, 1:2000) (Beyotime) for 1h at 37°C. Immunoreactive proteins were detected using ECL reagent Immobilon Western Chemilum HRP Substrate (#WBKLS0100, Millipore) and ChemiDocTM Imaging System (Bio-Rad). Bands were quantitated using ImageJ software.
+ Open protocol
+ Expand
3

Immunoblot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
U-87, SNB-19 and U-251 cells were lysed in 1% Nonidet P-40 lysis buffer 48 h after transfection with negative control ssRNA, miR-451, or miR-451 inhibitor oligonucleotide. Homogenates were clarified by centrifugation at 20,000 × g for 15 min at 4°C, and protein concentration was measured by the Lowry method. SDS-PAGE gels were loaded with 40 µg of protein from each sample, and resolved proteins were transferred to PVDF membranes (Millipore, Billerica, MA, USA) and incubated with primary antibodies against Rac1 (1:1,000 dilution; Abcam), AMPKα1, p-AMPKα1, mTORC1, p-mTORC1, confilin or p-confilin (1:1,000 dilution; Cell Signaling Technology, Danvers, MA, USA), followed by incubation with an HRP-conjugated secondary antibody (1:1,000 dilution; Zymed, San Diego, CA). The specific protein was detected using the SuperSignal protein detection kit (Pierce, Waltham, MA, USA). After washing with stripping buffer, the membrane was reprobed with antibody against GAPDH (1:1000 dilution; Santa Cruz Biotechnology, Santa Cruz, CA, USA).
+ Open protocol
+ Expand
4

Whole Cell Protein Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
We performed whole cell protein immunoblotting with the following antibodies: β-actin (Santa Cruz Biotechnologies; sc-47778), AMPKα1 (Abcam; ab3759), and proliferating cell nuclear antigen (PCNA; Thermo Fisher Scientific, Waltham, MA, USA; MA5-11358).
+ Open protocol
+ Expand
5

Dietary Intervention and Metabolic Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
A normal diet was purchased from Jiangsu Synergetic Pharmaceutical Bioengineering Co., Ltd. (Nanjing, Jiangsu, China, XTADM001) and consisted of 4% fat, 73.1% carbohydrate, and 14.2% protein. A high-fat diet was purchased from Jiangsu Synergetic Pharmaceutical Bioengineering Co., Ltd. (Nanjing, Jiangsu, China, XTHF60) and consisted of 60% fat, 20% carbohydrate, and 20% protein. Metformin was purchased from Sigma (St. Louis, MO, USA, D150959-5G). Hematoxylin eosin (H&E) and oil red O (ORO) staining kits were purchased from Solarbio (Beijing, China, G1120 and G1261). The rabbit antimouse adiponectin (ADIPOQ), MCP-1, TNF-α, IL-6, and DAB horseradish peroxidase chromogenic kits were purchased from Beyotime (Shanghai, China). The rabbit antimouse adiponectin receptor II (ADIPOR2), phospho-AMPKα1, AMPKα1, SIRT1, phospho-NF-κB p65, NF-κB p65, SREBP1C, FAS, acetyl coenzyme A carboxylase (ACC), PPAR-γ, SCD1, β-actin, and goat antirabbit IgG antibodies were purchased from Abcam (Cambridge, UK).
+ Open protocol
+ Expand
6

Western Blotting of AMPK Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as described previously (9 (link)) using the following primary antibodies: pan-AMPKα (CST no. 2532), p-AMPKα1/2(T172) (CST no. 2535), AMPKα1 (Abcam no. 3759), AMPKα1 antigen (Abcam no. 40461), AMPKα2 (Abcam no. 3760; NBP2-38532; NBP2-38532PEP), AMPKβ1 (CST no. 4178), AMPKβ2 (Novus Biologicals no. 92286), AMPKβ2 antigen (Novus Biologicals no. 92286PEP), AMPKγ1 (Abcam no. 32508), AMPKγ1 antigen (Abcam no. 218345), AMPKγ2 (Novus Biologicals no. 89324), AMPKγ2 antigen (Novus Biologicals no. 89324PEP), AMPKγ3 (Abcam no. 38228), Vdac (CST no. 4661), Tom20 (CST no. 42406), Cox4 (CST no. 4859), Gapdh (CST no. 2118), α-Tubulin (mouse, Abcam no. 7291), Catalase (rabbit, Abcam no. 16731), and Sec61a (CST no. 14867). Proteins were analyzed in comparison to a common protein standard loaded on the gel, which consisted of a whole-tissue lysate mixture of liver, heart, and skeletal muscle.
+ Open protocol
+ Expand
7

Analyzing AMPK Signaling and Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were prepared in RIPA lysis buffer containing 50 mM Tris (pH 7.5), 150 mM NaCl, 1 % NP-40, 0.5 % deoxycholic acid, 0.1 % SDS, and 5 mM EDTA with freshly prepared protease/phosphatase inhibitors (2 μg/ml aprotinin, 2 μg/ml leupeptin, 1 μg/ml pepstatin A, 1 mM PMSF, 1 mM Na3VO4, 5 mM NaF, and 10 mM Na4P2O7). For western blotting of BH3-only Bcl family proteins and caspase-3, a proteasome inhibitor (10 μM MG-132, Sigma) was added to the protein extracts. Thirty micrograms of total protein were electrophoresed on 8 or 15 % polyacrylamide gels and then transferred to PVDF membranes. Anti-phospho-AMPK T183(α-1)/T172(α-2), phospho-AMPK S491(α-2), AMPK α-1, AMPK α-2, Noxa, Puma (Abcam, Cambridge, UK), phospho-AMPK S485(α-1), AMPK α, Bim, caspase-3, cleaved-caspase-3, p-LKB1, or LKB1 (Cell Signaling Technology, Danvers, MA, USA) antibodies were used. Actin (Sigma) was used as the loading control. To visualize the protein bands, enhanced chemiluminescence (iNTRoN Biotechnology, Gyeonggi-do, South Korea) and a bio-imaging system (BIS 303 PC, Philekorea Technology, Daejeon, South Korea) were used. Normalized band intensity was quantified using Image J software.
+ Open protocol
+ Expand
8

Western Blotting Antibodies Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All antibodies for Western blotting were purchased from Cell Signaling (Beverly, MA) except AMPKα1, β-actin, and TATA (Abcam, Cambridge, MA) and AMPKα2 (Santa Cruz biotechnology, Santa Cruz, CA). A pharmacological AMPK activator (A769662) and the inhibitor of NF-κB (LY303511) were purchased from Tocris Bioscience (Ellisville, MO). The inhibitors for IKK (BMS345541) and NF-κB (SM7368) were purchased from Sigma-Aldrich. LPS (ultrapure LPS, E. coli 0111: B4) was purchased from InvivoGen (San Diego, CA, USA). Recombinant mouse TNF-α protein, anti-mouse TNF-α neutralizing antibody and isotype control IgG were obtained from R&D Systems (Abingdon, UK).
+ Open protocol
+ Expand
9

Western Blot Analysis of Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein extracts of liver and lung were incubated with the primary antibody [anti-endothelial nitric oxide synthase (eNOS), anti-inducible nitric oxide synthase (iNOS) (1:1000; Millipore Corporation, Billerica, MA, USA); anti-cyclooxygenase (COX)-1 (1:1000; Millipore); anti-COX-2 (1:1000; Abcam plc, Cambridge, UK); anti-5'-adenosine monophosphate-activated protein kinase-α 1 (AMPK-α1) (1:500; ab3759; Abcam plc, Cambridge, UK); anti-VEGF (1:1000; Santa Cruz); anti-VEGF receptor 1 (VEGF-R1) (1:1000; Abcam plc, Cambridge, UK); anti-VEGF receptor 2 (VEGF-R2) (1:500; Millipore Corporation, Billerica, MA, USA); antiphosphoinositide 3-kinases (PI3K) (1:1000; Cell Signaling Technology, Danvers, MA, USA)]. Then the blots were incubated with the secondary antibody (horseradish peroxidase-conjugated goat anti-mouse IgG antibody, Sigma Chemical Co., St. Louis, MO, USA). With a computer assisted video densitometer and digitalizing software (Kodak Digital Science™ ID Image Analysis Software, Eastman Kodak Co., Rochester, NY, USA), the blots were scanned and photographed, then the signal intensity (integral volume) of the appropriate bands was analyzed.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!