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1

Transmission Electron Microscopy of Ovarioles

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Dissected ovaries were processed for transmission electron microscopy as described previously (Liu et al., 2015 (link)). Briefly, ovarian tissue was fixed using 4% paraformaldehyde and 2% glutaraldehyde in 0.1 M sodium cacodylate (NaCac) buffer (pH 7.4). Ovarioles were then embedded within agarose. Stage 9 and 10 egg chambers were idenfied and isolated out of the agarose. The samples were post fixed in 2% osmium tetroxide in NaCac, stained with 2% uranyl acetate, dehydrated with a graded ethanol series, and embedded in EponAraldite resin. Next, thin sections were cut using a diamond knife on a Leica EM UC6 ultramicrotome (Leica Microsystems, Bannockburn, IL), collected on copper grids, and stained with uranyl acetate and lead citrate. Egg chambers were observed in a JEM 1230 transmission electron microscope (JEOL USA, Peabody, MA) at 110 kV and imaged with an UltraScan 4000 CCD camera and First Light Digital Camera Controller (Gatan, Pleasanton, CA).
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Transmission Electron Microscopy Tissue Preparation

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Preparation and imaging of tissue by electron microscopy was performed by the Augusta University Histology core facility. Tissue was fixed in 4% paraformaldehyde, 2% glutaraldehyde in 0.1M sodium cacodylate (NaCac) buffer, ph 7.4, postfixed in 2% osmium tetroxide in NaCac, stained en bloc with 2% uranyl acetate, dehydrated with a graded ethanol series and embedded in Epon-Araldite resin. Thin sections of 75nm thickness were cut with a diamond knife on a Leica EM UC6 ultramicrotome (Leica Microsystems Inc., Bannockburn, IL) collected on copper grids and stained with uranyl acetate and lead citrate. Tissue was observed in a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA) at 110kV and imaged with an UltraScan 4000 CCD camera and First Light Digital Camera Controller (Gatan Inc., Pleasantonm CA).
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3

Ultrastructural Analysis of Cellular Morphology

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Cells from each animal were fixed in 2% glutaraldehyde in 0.1 M sodium cacodylate (NaCac) buffer, pH 7.4, post-fixed in 2% osmium tetroxide in NaCl, stained en bloc with 2% uranyl acetate, dehydrated with a graded ethanol series and embedded in epon-araldite resin. Thin sections were cut with a diamond knife on a Leica EM UC6 ultramicrotome (Leica Microsystems, Inc, Bannockburn, IL), collected on copper grids and stained with uranyl acetate and lead citrate. Cells were observed in a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA) at 110 kV and imaged with an UltraScan 4000 CCD camera & First Light Digital Camera Controller (Gatan Inc., Pleasanton, CA). (Fig. 3, Table 1)
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4

Quantifying Autophagic Vacuoles in Infected Cells

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Mock-infected or MCMV-infected RPE cells were treated with typsin for 5 min at 37 °C and centrifuged at 200 ×g for 5 min. After the supernatant was removed, the cell pellets were fixed in 2% glutaraldehyde in 0.1 M sodium cacodylate (NaCac) buffer, pH 7.4, postfixed in 2% osmium tetroxide in NaCac, stained en bloc with 2% uranyl acetate, dehydrated in a graded ethanol series, and embedded in Epon-Araldite resin. Thin sections were made using a diamond knife on a Leica EM UC6 ultramicrotome (Leica Microsystems, Wetzlar, Germany), collected on copper grids, and stained with uranyl acetate and lead citrate. Cells were observed under a JEM 1230 transmission electron microscope (JEOL USA, Peabody, MA) at 110 kV and imaged with an UltraScan 4000 CCD camera and First Light Digital Camera Controller (Gatan, Pleasanton, CA). Autophagic vacuoles were counted in individual cells from multiple fields and nonserial sections. Autophagic vacuoles were quantified by counting the number of autophagic vacuoles per cell.
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5

Transmission Electron Microscopy of Extracellular Vesicles

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TEM imaging of the isolated EVs was performed at the Electron Microscopy and Histology Core at Augusta University in Augusta, Georgia as previously described (Helwa et al., 2017 (link); Shah et al., 2018 (link)). Freshly isolated EV suspensions were applied to copper mesh Formvar coated carbon stabilized grids, fixed in 4% paraformaldehyde for 1 h, and stained with 1% aqueous uranyl acetate. After air drying, TEM examination was performed using a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA, USA) at 110 kV and imaged with an UltraScan 4000 CCD camera & First Light Digital Camera Controller (Gatan Inc., Pleasanton, CA, USA).
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Transmission Electron Microscopy of Exosomes

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Tissue samples were processed for transmission electron microscopy (TEM) by the Electron Microscopy and Histology Core Laboratory at Augusta University. Briefly, EV suspension was fixed with an equal volume of 8% paraformaldehyde (PFA) to preserve ultrastructure. Ten microliters of suspended/fixed exosomes was applied to a carbon/formvar-coated 200 mesh copper grid and allowed to stand for 30–60 s. The excess was absorbed by Whatman filter paper. Ten microliters of 2% aqueous uranyl acetate was added and treated for 30 s. Grids were allowed to air-dry before being examined in a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA, United States) at 110 kV and imaged with an UltraScan 4000 CCD camera and First Light Digital Camera Controller (Gatan Inc., Pleasanton, CA, United States).
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7

Ultrastructural Analysis of Tumor-MDSCs

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Tumor-MDSC were fixed in 4% paraformaldehyde, 2% glutaraldehyde in 0.1M sodium cacodylate (NaCac) buffer, pH 7.4, post-fixed in 2% osmium tetroxide in NaCac, stained in block with 2% uranyl acetate, dehydrated with a graded ethanol series, and embedded in Epon-Araldite resin. Thin sections were cut with a diamond knife on a Leica EM UC6 ultramicrotome (Leica Microsystems, Inc, Bannockburn, IL), collected on copper grids and stained with uranyl acetate and lead citrate. Tissue was observed in a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA) at 110 kV and imaged with an UltraScan 4000 CCD camera & First Light Digital Camera Controller (Gatan Inc., Pleasanton, CA). Quantitative analysis was performed with ImageJ. (NIH, LOCI, University of Wisconsin-Madison)
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8

Transmission Electron Microscopy of EVs

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Tissue samples were processed for TEM by the Electron Microscopy and Histology Core Laboratory at Augusta University as described previously [16 ]. Briefly, EVs suspension was fixed with an equal volume of 8% paraformaldehyde to preserve ultrastructure. Ten microliters of suspended/fixed exosomes was applied to a carbon-formvar-coated 200 mesh copper grid and allowed to stand for 30–60 s. The excess was absorbed by Whatman filter paper. Ten microliters of 2% aqueous uranyl acetate was added and treated for 30 s. Grids were allowed to air dry before being examined in a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA) at 110 kV and imaged with an UltraScan 4000 CCD camera & First Light Digital Camera Controller (Gatan Inc., Pleasanton, CA).
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9

Electron Microscopy of Liver Tissue

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EM analyses were performed at the High Resolution Electron Microscopy Facility of Medical College of Georgia at Augusta University. Livers were in situ fixed by perfusion with 2% glutaraldehyde in 0.1 M sodium cacodylate buffer, pH 7.4, postfixed with 2% mOsO4 (also in sodium cacodylate buffer) for 1 h. After dehydration, tissues were embedded in epon-Araldite resin. 70-nM thin sections were cut on a MT-7000 ultramicrotome and collected on copper grids. Sections were stained with uranyl acetate and lead citrate and examined under a JEM-1200 EXII transmission electron microscope (JEOL USA Inc.). Images were captured with an UltraScan 4000 CCD camera and First Light Digital Camera Controller (Gatan Inc.).
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10

Negative Staining and Immunogold Labeling of EVs

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For negative staining of EVs, freshly isolated EV suspensions were applied to copper mesh Formvar coated carbon stabilized grids, fixed in 4% paraformaldehyde for 1 hour, and stained with 1% aqueous uranyl acetate. For labelling with anti-CD81 (BioRad, 1D6) [28 (link)], EV samples were fixed in 4% paraformaldehyde diluted in 0.1M cacodylate buffer (pH 7.4). Grids were floated sequentially onto drops of 1M ammonium chloride, blocking buffer (0.4% BSA in PBS), blocking buffer (negative control) or primary antibody (CD81; 1:100), 1.4 nm anti-rabbit nanogold (Nanoprobes, Inc; 1:1000), HQ Silver (gold enhancement reagent, Nanoprobes, Inc.) and 2% aqueous uranyl acetate. After air drying, TEM examination was performed using a JEM 1230 transmission electron microscope (JEOL USA Inc., Peabody, MA) at 110 kV and imaged with an UltraScan 4000 CCD camera & First Light Digital Camera Controller (Gatan Inc., Pleasanton, CA) [27 (link)].
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