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Amplex ultrared

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Germany

Amplex UltraRed is a fluorogenic substrate used for the detection and quantification of hydrogen peroxide (H2O2) and various peroxidase enzymes. It is a highly sensitive and stable compound that produces a red-fluorescent product upon oxidation by peroxidases.

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135 protocols using amplex ultrared

1

Indirect ELISA for Protein Detection

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Indirect ELISA assays were performed using Maxisorp 96-well plates (NUNC) coated for 2 h at room temperature with 50 μl/well of sample in coating buffer (0.2 M carbonate buffer, pH 9.5). After rinsing three times with 75 μl Protein Free Blocking Buffer (Pierce) the wells were blocked with Protein Free Blocking Buffer for 2 h. The wells were then incubated overnight at 4 °C with 50 μl of detection antibody prepared in blocking buffer. After three washes with TBST, the wells were incubated for 2 h with 50 μl HRP-conjugated reaction antibody. After three washes, 100 μl of freshly made Amplex UltraRed (Invitrogen) substrate solution (5 μM Amplex UltraRed in 50 mM sodium citrate, pH 6.0 with the addition of H2O2) was added. After 45 min incubation at room temperature in the dark, HRP activity was detected by measuring fluorescence with a microplate reader set for excitation in the range of 530–560 nm and emission-detection at 590 nm.
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2

Mitochondrial Respiration and H2O2 Measurement

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Respiratory capacity in PmFBs or isolated mitochondria from LV was measured by high-resolution respirometry (O2K, OROBOROS Innsbruck, Austria), in buffer Z supplemented with 20 mM creatine monohydrate and 10 μM blebbistatin, at 37 °C to inhibit myosin II. To assess lipid and Krebs cycle intermediates-supported respiration, substrates were sequentially added in the following concentrations: 18 μM Palmitoyl-carnitine, 5 mM L-carnitine, 0.5 mM malate, 4 mM ADP, 10 mM pyruvate, 10 mM glutamate, 10 mM succinate. For experiments using isolated mitochondria, 25 μg of total mitochondrial protein was used. JH2O2 was measured using the Amplex UltraRed/Horseradish Peroxidase fluorescence system in buffer Z supplemented with 10 μM Amplex UltraRed (Invitrogen), 1 U/mL horseradish peroxidase, 20 U/mL CuZn superoxide dismutase, and 10 μM Blebbistatin. Data was collected in a Fluorolog spectrofluorometer (HORIBA Jobin Yvon), at 37 °C. 10 mM succinate or 18 μM palmitoyl-carnitine + 5 mM L-carnitine was added followed by 1 μM 1,3-bis(2-chloroethyl)-1-nitrosourea (BCNU), 1 μM auranofin.
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3

Screening Hybridoma Supernatants for NUCB1-hIAPP Binding

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Hybridomas were created using the HTP Hybridoma production process at AbPro Labs (Lexington, MA). The supernatants were screened for their binding to the NUCB1‐hIAPP complex and NUCB1 alone through direct ELISA. Maxisorp 96‐well plates (NUNC) were coated for 2 hours at room temperature (RT) with 50 µl of either hIAPP‐NUCB1 complex or NUCB1 in coating buffer (0.2 M carbonate buffer, pH 9.5). After rinsing five times with ELISA wash buffer (0.1 M sodium phosphate, pH 7.5, 0.15 M NaCl, 0.05% Tween 20) the wells were treated for 2 hours with Protein Free Blocking Buffer and then incubated overnight with 50 µl of supernatant diluted in blocking buffer. After five washes, the wells were incubated for 1 hour with the detection antibody prepared in blocking buffer, washed and incubated for 1 hour with 50 µl HRP conjugated reaction antibody. After five washes, 50 µl of freshly made Amplex UltraRed (Invitrogen) substrate solution (5 µmol/L Amplex UltraRed in 50 mmol/L sodium citrate, pH 6.0 with the addition of H2O2) was added and HRP activity was detected by measuring fluorescence with a microplate reader.
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4

Labeling Amyloid-beta with Fluorescent Probes

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The pSNAP-tag(m) plasmid, which was used as backbone, is available at Addgene (#101135). The transfection reagent TransIT-LT-1 was purchased from Mirus (Lot81023060) and the ncAA TCO*K (axial trans-cyclooct-2-ene–L–lysine; CAS 1801936-26-4) was purchased from SiChem. We used four fluorescent dyes for labeling. The SNAP-Cell® 647-SiR (S9102 S) and the SNAP-Cell® TMR-Star (S9105 S) were purchased from New England BioLabs and the 6-methyl-tetrazine-BDP-FL is produced by Jena Bioscience (RK011-001). The SiR-DNA kit (SC007) was purchased by Spirochrome. For detecting Aβ, we used the High sensitive IBL-ELISA: Amyloid-beta (1–42) (LOT. 1D-818) and Amplex® UltraRed from Molecular Probes, Thermo Fisher Scientific. The 4–20% polyacrylamide Bis-Tris gels were purchased by BioRad. The cOmplete™, EDTA-free Protease Inhibitor Cocktail was purchased from Sigma (000000005056489001). The primary antibodies we used are the Anti-SNAP-tag® antibody (Polyclonal), (1 : 200) from New England BioLabs (P9310 S) and the Anti-β-Amyloid, 1–16, Clone: 6E10 (1 : 1000) from BioLegend (803001). The secondary antibodies are the IRDye 680RD Donkey anti-Rabbit (926-68073) and IRDye 800 CW Donkey anti-mouse (92632212) from LI-COR Biosciences.
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5

Mitochondrial Hydrogen Peroxide Quantification

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H2O2 was detected using 5 U/ml horseradish peroxidase to catalyze the oxidation of 50 µM Amplex UltraRed (Molecular Probes) by H2O2 to its fluorescent product. Exogenous superoxide dismutase (25 U/ml) converted any superoxide to H2O2. Fly mitochondria (0.075 mg mitochondrial protein/ml) were suspended in KHE at 25 °C with 1 mM ADP, 2.5 µg/ml oligomycin, 5 µM FCCP, and the detection system. Fluorescence was monitored using a microplate reader (Pherastar, BMG Labtech) at λexcitation=540 nm, λemission=590 nm. ZR75-30 mitochondria (0.15 mg protein/ml) were resuspended in KHEPMB with 1 mM  ADP plus 2.5 µg/ml oligomycin. Fluorescence was recorded using a Varian, Cary Eclipse spectrofluorimeter (λexcitation=560 nm, λemission=590 nm) with constant stirring at 37 °C. Fluorescence was calibrated using H2O2 standards under the exact conditions of the assay.
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6

Mitochondrial Hydrogen Peroxide Measurement

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Diaphragm mitochondrial hydrogen peroxide production from permeabilized muscle fibers was measured continuously using a Fluorolog-3 spectrofluorometer (HORIBA, Kyoto, Japan). Measurements were performed at 37 °C using the Amplex UltraRed (Molecular Probes, Eugene, OR, USA) (10 µM)/horseradish peroxidase (HRP) (1 U/mL) system as described [45 (link)].
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7

Simultaneous Measurement of Cellular Respiration and Oxidative Stress

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The Chinese hamster ovary cell line 51D1.3 (herein called CHO) and a stable transfectant expressing a soluble form of human P450 oxidoreductase (51D1.3/sPOR, herein called CHO/POR) (Gu et al., 2009 (link)), were grown in spinner flasks in αMEM plus 5% fetal bovine serum. Late log phase cultures were harvested by centrifugation, resuspended at 5 × 105 cells/mL in phenol red-free high-glucose DMEM (Invitrogen) supplemented with 4 mM Glutamax-1, 1 mM sodium pyruvate and 5% FBS. Stirred cell suspensions (2 mL) were transferred to an OXYBOROS O2K oxygraph for simultaneous polarographic measurement of non-respiratory O2 consumption and fluorimetric measurement of H2O2 generation as previously (Hunter et al., 2012 (link)). Bovine liver superoxide dismutase (10 U), horseradish peroxidase (10 U), Amplex UltraRed (50 nmol) and rotenone (1 nmol), all from Molecular Probes Invitrogen (Eugene, OR), were injected and cumulative drug additions (from saline stock solutions) were made every ∼5 min once endogenous rates had stabilized. Signals were recorded every 2 s, and flux derivatives were estimated ∼2 min after each addition using a Savitzky–Golay smoothing filter (40 data point window) in DATLAB version 4.3.
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8

In Vivo Penile Oxidative Stress Measurement

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In vivo hydrogen peroxide (H2O2) and superoxide were measured in the penis via microdialysis on anesthetized rats [32 (link),33 (link)]. The penis was freed of skin and fascia, and a linear microdialysis probe (Bioanalytical Systems, Inc., West Lafayette, IN) with a 20 kDa maximal pore size was inserted into the shaft of the penis. Microdialysis probes were perfused with saline containing 100 μM Amplex Ultrared (Molecular Probes, Eugene, OR) and 1.0 U/ml horseradish peroxidase (HRP; Sigma Aldrich, St. Louis, MO) at 1.0 μl/min with a microdialysis pump (Harvard Apparatus, Holliston, MA). Amplex Ultrared is a fluorogenic substrate, which in the presence of HRP reacts with H2O2 to produce the highly fluorescent resorufin [34 (link),35 (link)]. Three 15-minute replicate samples were collected, and fluorescence of the dialysate was measured in a fluorometer (BioRad, Hercules, CA) at 510 nm Ex/590 nm Em. 10 U/ml superoxide dismutase (SOD; Sigma Aldrich, St. Louis, MO) was then added to the perfusate, allowing for conversion of superoxide that crosses over the microdialysis membrane into H2O2, which then stimulates the conversion of Amplex Ultrared to resorufin by HRP [36 (link)]. Three 15-minute replicate samples were collected, from which fluorescence was measured. Following measurements, penile tissue was harvested, and stored at −80°C until analysis.
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9

Quantification of Hippocampal Mitochondrial Function

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OCR and the rate of mitochondrial hydrogen peroxide production were simultaneously determined using the O2k (OROBOROS Instruments, Innsbruck, Austria) and O2k-Fluo LED2-Module Fluorescence-Sensor Green. Following rapid dissection, the dorsal hippocampus (2–3 mg) was suspended in ice cold Buffer X (7.23 mm K2EGTA, 2.77 mm CaK2EGTA, 20 mm imidazole, 0.5 mm DTT, 20 mm taurine, 5.7 mm ATP, 14.3 mm PCr, 6.56 mm MgCl2–6H2O, and 50 mm K-MES with a pH of 7.1) and permeabilized with saponin (50 µg/ml) for 30 min followed by 3 × 5 min washes in ice-cold wash buffer Z [105 mm K-MES, 30 mm KCl, 10 mm K2HPO4, 5 mm MgCl2–6H2O, 0.5 mg/ml bovine serum albumin, 0.1 mm EGTA (pH 7.1)]. O2k measurements were obtained in buffer Z media at 37 °C containing 10 µm Amplex UltraRed (Molecular Probes, Eugene, OR), 1 U/ml horseradish peroxidase, and 5 U/ml SOD. Rates of respiration were determined using sequential additions of substrates and inhibitors as follows: glutamate (10 mm), malate (2 mm), pyruvate (5 mm), ADP (5 mm), succinate (10 mm), rotenone (1 µm), antimycin A (1 µm), and TMPD (0.5 mm) immediately followed by ascorbate (5 mm). Antimycin A values were used to normalize respiration measurements to account for nonmitochondrial oxygen consumption. Data for OCR were normalized by milligrams of hippocampal wet weights.
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10

Mitochondrial Hydrogen Peroxide Emission Assay

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Mitochondrial H2O2 emission rate was measured continuously in permeabilized fiber bundles (~ 3 mg) via a spectrofluorometer (Fluorolog-3 HORIBA Jobin Yvon, Edison, NJ, USA) at 37 °C with Amplex™ UltraRed (Molecular Probes, Eugene, OR) (10 μM)/horseradish peroxidase (1 U/mL) system. The assay was performed at 37 °C in a magnetic stirring cuvette using succinate as the substrate. Specifically, this assay uses horseradish peroxidase to catalyze the H2O2-dependent oxidation of non-fluorescent Amplex™ UltraRed to a fluorescent resorufin, and it was used to measure H2O2 as an indicator of superoxide production. Excitation and emission was set at 565 and 600 respectively. Blebbistatin (25 μM) prevented myofiber contraction during the measurements. The levels of resorufin were recorded every 30 s for 10 min, and H2O2 production was calculated using a standard curve. Each fiber bundle was washed and dehydrated for normalization of the measurements. The rate of ROS production was expressed as H2O2 emission in pmol·min−1 mg−1 dry wt.
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