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Odyssey clx scanner

Manufactured by LI COR
Sourced in United States, United Kingdom

The Odyssey CLx scanner is a high-performance fluorescence imaging system designed for quantitative Western blotting, multiplex fluorescent Western blotting, and other fluorescence-based applications. The Odyssey CLx scanner is capable of detecting and quantifying fluorescent signals with high sensitivity and resolution.

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176 protocols using odyssey clx scanner

1

Measuring Exendin Plasma Clearance in Mice

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All animal experiments were conducted in compliance with the University of Michigan University Committee on Use and Care of Animals (UCUCA). For measuring plasma clearance, AF680 sExendin (1.2 nmol) or a validated K12C fluorescent exendin control peptide21 , 33 (link) was injected in the lateral tail vein of C57BL/6 mice (6 mice total). At predetermined time points (1, 3, 5, 15, 30, 60, 180 min), retro orbital blood samples were collected. A LICOR Odyssey CLx scanner (Lincoln, NE) was used to measure the fluorescence intensity for each sample and the intensities were converted to concentration using a dilution series of AF680 sExendin in mouse plasma. After 3 h, the mice were sacrificed and the pancreas resected. Islets were visualized by a near-infrared scan on a LICOR Odyssey CLx scanner.
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2

Quantitative Western Blot Analysis of Neuron-Glia Co-Cultures

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For Western blot analysis, neuron/glia co‐cultures were grown for 12 days on 6 cm culture dishes plated with 500,000 cells. Cultures were washed two times with ice‐cold PBS, harvested, and homogenized by sonication. The samples were incubated with Laemmli sample buffer (Bio‐Rad) for 1 h at 37°C and aliquots containing 25 μg protein were subjected to sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE) using mini‐gels (Mini Protean 3; Bio‐Rad). Proteins were transferred onto nitrocellulose membranes in a semi‐dry transfer cell (Trans‐Blot SD; Bio‐Rad) at 15 V for 75 min. After blotting, the transferred total proteins were stained with REVERT 700 Total Protein Stain (LI‐COR Biosciences) and detected by the ODYSSEY CLx scanner (LI‐COR Biosciences). After destaining, the blots were blocked for 1 h in PBS containing 5% nonfat dry milk at room temperature, followed by incubation with primary antibody overnight at 4°C in PBS containing 5% nonfat dry milk. The blots were then washed five times for 5 min with TBST and incubated with secondary antibodies for 1 h at room temperature. The blot was washed again with TBST and immunoreactivity was detected by the ODYSSEY CLx scanner (LI‐COR Biosciences). Immunoreactivity was quantified with the Image Studio software (LI‐COR Biosciences) and normalized to total protein in the corresponding lanes.
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3

Exendin Binding Assay on NIT-1 Cells

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NIT-1 cells were plated, grown for 48 hours, harvested with 0.05% trypsin-EDTA, washed, and resuspended in PBS with 0.1% bovine serum albumin (BSA). The cells were then aliquoted and suspended in binding buffer containing fluorescent exendin conjugates ranging in concentration on ice (0.025–250 nM). The cells were then washed two times with 0.1% BSA in PBS and then immediately analyzed using an Attune Acoustic Focusing Cytometer (Applied Biosystems) or a LICOR Odyssey CLx scanner (Lincoln, NE). Affinity curves and statistical analyses were carried out using Prism 6.0 software.
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4

Western Blot Quantification Protocol

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Immunoblots were performed as described 74 (link). Samples were fractionated by SDS-PAGE and transferred to nitrocellulose membranes. The membrane was blocked in 50 mM Tris-buffered saline with 0.1% Tween-20 (TBST, pH 8.0) containing 4% nonfat milk for 1 hr at room temperature and probed with primary antibodies: 1) anti-HA-probe (Santa Cruz Biotechnology, Cat# sc-7392, 1:500), 2) anti-Ub (Santa Cruz Biotechnology, Cat# sc-8017) or anti-actin (Sigma-Aldrich, Cat# A2066, 1:1,000) in TBST containing 2% BSA at 4°C overnight. After washing 3X with TBST, the membranes were incubated with secondary antibodies: donkey IRDye 680RD anti-mouse (LI-COR Biosciences, Cat# 926–68072, 1:20,000), Goat IRDye 680RD anti-rabbit (LI-COR Biosciences, Cat# 926–68071, 1:20,000), and/or donkey IRDye800CW anti-mouse (LI-COR Biosciences, Cat# 926–32212, 1:20,000), goat IRDye 800CW α-rabbit (LI-COR Biosciences, Cat# 926–32211, 1:20,000) for 45 min at room temperature. Capture and analysis were performed using Li-Cor Odyssey CLX scanner and Image Studio software (LI-COR Biosciences).
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5

Western Blot Analysis of Mitochondrial Proteins

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Proteins were separated by tris-glycine gel electrophoresis (Thermo Scientific), transferred to a PVDF membrane, and incubated with primary antibodies against Drp-1 (CST-8570, RRID: AB_10950498) and MFF (CST-84580, RRID: AB_2728769), Cytochrome c (sc-13156, RRID: AB_627385), Sirt3 (sc-365175, RRID: AB_10710522), total Erk1/2 (CST-9102, RRID: AB_330744), pErk1/2 (CST-4370, RRID: AB_2315112), Gapdh (sc-32233, RRID: AB_627679), Cox4 (sc-517553, RRID: AB_2797784), followed by IRDye® 680 RD goat anti-mouse (RRID:AB_10956588), or goat anti-rabbit IgG (H+L) (RRID:AB_621841), and IRDye® 800CW goat anti-mouse (RRID:AB_621842) or goat anti-rabbit IgG (H+L) (RRID:AB_621843). Blots were imaged using LI-COR Odyssey® CLx scanner (LI-COR Biosciences, Lincoln, NE). Protein band density was determined using Image J and normalized to Gapdh (cytosol, whole lysate), Cox4 (mitochondria), and expressed as a fold-change vs. sham (n=3–5 animals/group).
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6

Western Blot Analysis of MAPK Signaling

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Samples (20 μL containing 10 μg protein) were loaded per well of a NuPage 4-12 % Bis-Tris gradient gels (#NP0336BOX, Thermo Fisher Scientific), and the SDS-Page gel was subsequently transferred to nitrocellulose membranes (#1620115, BioRad) by the Western blot. Membranes were incubated following previously established protocols (87 (link)). For reproducibility, detailed information regarding the antibodies used in the study are listed in table S6. Prepared samples were scanned using the LiCor Odyssey® CLx Scanner (Li-Cor). By utilizing the Li-Cor secondary antibodies, we were able to detect the MAPK, pMAPK, and α-tubulin on the same blot without the need of stripping/reblotting. In the same membrane, each band was cut based on their size. For instance, total-ERK1/2 and phospho-ERK1/2 bands were collected around 42/44 kDa and α-Tubulin band was collected around 50 kDa in the same membrane. For statistical analysis, we normalized the pMAPK/MAPK ratio to α-tubulin in case drug treatment changed ERK1/2 levels.
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7

Quantitative Western Blot Analysis

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A LI-COR Odyssey CLx scanner (LI-COR Biosciences, Lincoln, NE) operated using LI-COR Image Studio (ver. 4.0) was used to scan antibody-stained western blot membranes and for quantification of band intensities. Experimental band intensities were normalized to GAPDH intensity measured in each lane. Statistical significance of normalized band intensities was analyzed and graphed using the GraphPad Prism software (La Jolla, CA). Statistical significance was determined by an unpaired two-tailed Student’s t test.
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8

Protein Microarray Protocol Normalization

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Protein microarrays were printed and processed as described previously.41 42 (link) Slides were scanned using Licor Odyssey CLX Scanner (LiCOR). Total signal intensity was normalised to total beta-actin (Sigma, Catalogue No A1978) and quantified using Array-Pro analyzer software package (Media Cybernetics, Maryland, USA).
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9

Urine Albumin-Creatinine Ratio Quantification

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Urine samples were analyzed using albumin ELISA (mouse albumin ELISA kit; Bethyl Labs, Montgomery, TX, USA) and a creatinine assay (Cayman Chemical, Ann Arbor, MI, USA). In order to obtain the urinary albumin creatinine ratio (ACR), albumin concentrations were divided by creatinine concentrations. For the coomassie staining 0.5 µl urine was diluted 1:20 with 1 × laemmli buffer with DTT and run on a 10% sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE). Subsequently, the gels were stained with a colloidal coomassie staining solution and scanned using a LI-COR Odyssey CLx scanner (LI-COR Biotechnology, Lincoln, Nebraska, USA).
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10

Western Blot Protocol for Protein Quantification

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Protein concentration was measured using the BCA Protein Assay Kit (Thermo Fisher Scientific). The concentration normalized samples were mixed with NuPAGETM LDS Sample Buffer and NuPAGETM Sample Reducing Agent (Thermo Fisher Scientific). After boiling, the samples were subjected to SDS-PAGE on NuPAGETM 4–12% Bis-Tris Protein gels using MES running buffer (Thermo Fisher Scientific). Then, proteins on the gels were transferred to nitrocellulose membranes (Thermo Fisher Scientific) using the iBlotTM 2 Gel Transfer Device (Thermo Fisher Scientific) or Bio-Rad Wet electroblotting system (Bio-Rad). The membranes were incubated with primary and corresponding fluorophore-conjugated secondary antibodies, and bands were visualized by the digital imaging system LI-COR Odyssey CLx scanner (LI-COR Biosciences).
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