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16 protocols using pv235

1

Immunocytochemistry of Opa1, Cox, and Markers

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Immunocytochemistry was used to probe the cellular localization of Opa1, Cytochrome c oxidase (Cox) and some autophagic and antioxidant markers in cryostat sections using antibodies recognizing Opa1 (1/125; Abcam #ab42364 RRID:AB_944549), Cytochrome c oxidase subunit I (1/500; Invitrogen, #459600 RRID:AB-1501840), p62 (1/1000, MBL International #PM045 RRID:AB_1279301) and Nrf2 (1/1000, Santa Cruz Biotechnology # sc-365949 RRID:AB_10917561). Anti-parvalbumin (1/500; Swant, Bellinzona, Switzerland, #PV235 RRID:AB_10000343) was used to label the hair cells and the spiral ganglion neurons. All secondary antibodies were used at a dilution of 1/1000. This included donkey anti-mouse and anti-rabbit IgG conjugated to Alexa 488 or Alexa 568 (Molecular Probes #A-21202 RRID:AB-141607, #A-21206 RRID:AB-2535792, #A-10037 RRID:AB-2534013). DNA was stained by Hoechst 33342 (0.002% wt:vol, Sigma, Saint Louis, Missouri, USA). Fluorescent tags were visualized using a confocal microscope (ZEISS LSM 880 Airyscan). In control specimens without primary antibodies, neither Alexa 488 nor 568 fluorescent tags were observed. Immunocytochemistry analysis required 4 to 5 cochleae per age and strain (Table S1). All experiments were performed in triplicate.
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2

Multiplex IHC for Neuronal Markers

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IHC was performed on serial section slides in two independent multiplexed batches. The first batch followed the sequence mouse anticalcium/calmodulin-dependent protein kinase II alpha (MA1-048; Invitrogen), rabbit antisomatostatin (T-4102; Peninsula Laboratories), rabbit anti-GFP (ab290; Abcam), and mouse anti-PV (PV235; Swant). The second batch followed the sequence, mouse anti-glutamate decarboxylase (GAD67, ab26116; Abcam), mouse anti-fox-3 (NeuN, MAB 377; Millipore), and rabbit anti-GFP. After primary and secondary antibody incubation, slides were stained with DAPI. Whole slide images were captured at 20 × using an Akoya Biosciences Polaris instrument. Image exposures for each fluorochrome were constant for all slides. Detailed image analysis is described in the Supplementary Materials.
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3

Somatosensory Cortex Protein Localization

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Samples from the somatosensory cortex of a human brain were obtained from routine autopsy in accordance with local ethical committee guidelines. The subject died of non‐neurological causes. Tissue was immersion‐fixed in 4% PFA over 48 h and snap‐frozen on dry ice. Co‐localization studies were performed on cryosections using a PRG‐1 antibody (custom‐made antibody described and characterized by Trimbuch et al, 2009 was used in a dilution of 1:500) and antibodies against GAD67 (1:500; mab5406, Chemicon), NeuN (1:1,000; mab377, Chemicon), MAP2 (1:1,000; mab 3418, Chemicon), PSD‐95 (1:250, mab1569; Millipore), parvalbumin (1:500; PV235, Swant), and calretinin (1:500; 6B3, Swant). Confocal images were taken on a Leica SP5.
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4

Immunohistochemical Analysis of VIPR1 in PV+ Neurons

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Mice were deeply anesthetized and intracardially perfused with 4% paraformaldehyde in 0.1 mol/L phosphate buffer (pH 7.4), and brains were fixed overnight. Each brain was sliced (50 μm) coronally with a vibratome (Leica). The brain sections were preincubated in sodium citrate buffer (10 mM citrate buffer, pH 6.0) at 80 °C for 20 min, cooled to room temperature, and washed in 1× PBS for 20 min twice. Sections were incubated in PBS-blocking buffer (5% goat serum, 3% BSA, 0.2% Triton X100, in PBS) for 1 h at room temperature and incubated with the following primary antibodies: VIPR1 (1:250, PA3-113, Invitrogen), parvalbumin (PV) (1:5000, PV235, Swant), GFP (1:1000, ab13970, Abcam), GABA (1:1000, A2052, Sigma Aldrich) for 48 h at 4 °C. Appropriate Alexa dye–conjugated secondary antibodies (1:1000, Thermo Fisher Scientific) were used to detect primary antibody binding for 48 h at 4 °C. DAPI (Invitrogen) was used as the nuclear counterstain. Images of immunostained postmortem human brain sections were quantified using Fiji (ImageJ). PV-stained sections were thresholded and used to automatically generate ROIs around PV+ cell bodies. Average pixel intensity of VIPR1 staining of the same slices was quantified within those ROIs.
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5

Immunohistochemical Localization of Parvalbumin

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Following recording, cells were resealed by obtaining outside-out patches and slices immersion-fixed in 4% paraformaldehyde (PFA) in 0.1 m phosphate buffer (PB; pH 7.4) at 4°C for 24–48 h. Slices were then transferred to fresh PB and stored for a maximum of three weeks. Before immunohistochemical processing, slices were rinsed in PB, followed by PBS (0.9% NaCl) and blocked in PBS containing 10% normal goat serum (NGS), 0.3% Triton X-100 and 0.05% NaN3 for 1 h. Slices were then incubated with a monoclonal mouse antibody raised against PV (1:5000, PV-235, Swant) in PBS containing 5% NGS, 0.3% Triton X-100 and 0.05% NaN3 for 72 h at 4°C. Slices were then rinsed in PBS and a fluorescent-conjugated secondary antibody was applied (goat anti-mouse IgG, Alexa Fluor-405, 1:1000, Invitrogen) in combination with fluorescent-conjugated streptavidin (Alexa Fluor-647, 1:1000, Invitrogen), in a PBS solution containing 3% NGS, 0.1% Triton X-100 and 0.05% NaN3 for 24 h at 4°C. Slices were rinsed in PBS and then desalted in PB before being mounted in on glass slides (Fluoromount-G, Southern Biotech) with a 300-μm-thick agar spacer, cover-slipped, sealed and stored at 4°C before imaging.
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6

Immunohistochemical Analysis of Neuronal Labeling

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For identification of cells following recordings, tissue was fixed in 4% paraformaldehyde overnight at 4oC. Slices were washed with PBS three times, 20 min each, and incubated in Streptavidin-Alexa 488 (S11223) or Alexa 647 (1:500, S32357, Invitrogen) and DAPI (1:1000, in 0.3% PBST) overnight at 4°C. Slices were washed in 0.3% PBST four times and mounted on glass slides with Mowiol 4-88. Mcherry fluorescence in the MEC was examined with confocal imaging and those animals where virus injection missed MEC L5 were excluded.
For staining of the interneuron marker Parvalbumin (PV), slices were prepared as described above, then incubated in primary antibody solution containing mouse anti-PV (1:1000, PV 235, Swant) and 5% NGS in 0.3% PBST for 48 hr at 4°C. Slices were then washed and incubated in secondary antibody solution with Alexa-conjugated Streptavidin and DAPI prepared in 0.3% PBST and mounted on glass slides after overnight incubation.
A Zeiss LSM800 microscope was used for image acquisition of the slices. Pinhole was set to 1 Airy Unit. Objectives used include ×10 (air), ×20 (air), and ×40 (oil) to image the hippocampal formation, morphology of biocytin filled cells, and immunolabelling of interneurons, respectively.
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7

Immunohistochemistry of Parvalbumin in Mouse Brain

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Mice were perfused with PBS, followed by 4% (w/v) paraformaldehyde in PBS (pH 7.4). Brains were harvested and fixed with 4% paraformaldehyde overnight, transferred to 30% (w/v) sucrose in PBS, and then cryosectioned into 40 μm thick slices. For immunohistochemistry, brain slices were permeabilized with 0.2% Triton X-100 in PBS for 10 min and transferred to blocking buffer (5% donkey serum, 2% BSA and 0.2% Triton X-100 in PBS) for 1 h at room temperature. Next, the sections were incubated with primary antibody for parvalbumin (1:1000 diluted in blocking buffer, PV-235, Swant) overnight at 4 °C. The sections were subsequently incubated with appropriate secondary antibodies (1:500 diluted in blocking buffer, anti-streptavidin Alexa Fluor 488, anti-mouse Alexa Fluor 555; Invitrogen) for 2 h at room temperature. All sections were then stained with DAPI (1:5000 diluted with 0.2% Triton X-100 in PBS, Sigma-Aldrich) and mounted with Fluorsafe (Merck Millipore). Images were captured using an LSM 710 confocal microscope (Zeiss).
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8

Multimodal Neuronal Phenotyping

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Slices were permeabilized in blocking buffer (10% normal goat serum and 1% TritonX-100 in PBS) for 2 h at room temperature and washed three times with PBS. Antibodies were prepared in 1% blocking buffer: biotin-conjugated anti-NeuN at 1:1000 (Merck, MAB377B); mouse anti-parvalbumin at 1:2000 (Swant, PV 235); rabbit anti-calbindin at 1:2000 (Swant, CB38); rabbit anti-Olig2 at 1:1000 (Merck, AB9610); streptavidin Alexa Fluor 647, goat anti-mouse Alexa Fluor 647, and goat anti-rabbit Alexa Fluor 555 at 1:500, (Thermo Fisher, S32357, A21235, A21428). Slices were incubated in primary antibodies overnight at 4 °C and washed three times in PBS. Slices were then incubated in secondary antibodies for 2 h at room temperature and washed three times in PBS. Nuclei were stained with DAPI.
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9

Immunocytochemical Analysis of Neuronal Markers

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Immunocytochemistry was as described previously (Larsen et al., 2016 (link)). Primary antibodies consisted of monoclonal COUPTFII (1:500; Perseus Proteomics PP-H7147-00, Tokyo, Japan), polyclonal panDLX (1:1000; gift from Dr. Yury Morozov, Yale University, New Haven, CT), monoclonal βIII-Tubulin (1:5,000; Sigma T8660), polyclonal Calretinin (CALB2; 1:1000; Swant 7697, Switzerland), monoclonal Parvalbumin (1:5000; Swant PV235), and polyclonal MAP2 (1:2000; BioLegend 822501, San Diego, CA). Secondary antibodies used were: anti-mouse CF555, anti-rabbit CF488 (both at 1:2000; Sigma SAB4600060 and SAB4600036), and anti-chicken CF647 (1:500; Sigma SAB4600179).
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10

Immunohistochemical Analysis of Chondroitin Sulfate Proteoglycans

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Free-floating brain slices were rinsed three times in PBS and digested with chondroitinase ABC (C3667, Sigma; for details, see immunohistochemistry) as enhancing step for the AB1031 aggrecan staining (AB1031, Millipore). The sections were then blocked with blocking solution (5% normal donkey serum, Jackson ImmunoResearch, UK and 0.25% Triton X-100 in PBS) for one hour at RT. The sections were incubated overnight at 4°C with a primary antibody (polyclonal rabbit anti-aggrecan 1∶1000, AB1031, Millipore; monoclonal mouse anti-chondroitin sulfate proteoglycan 1∶1000, protein core epitope, Cat-315/MAB1581, Millipore; monoclonal goat anti-parvalbumin, 1∶2500, PV235, Swant) diluted in blocking solution. Following three rinses with 2% normal donkey serum and 0.25% Triton X-100 in PBS, the sections were incubated with appropriate secondary antibodies (donkey anti-rabbit/mouse/goat antibody) conjugated with either Cy3 or DyLight 488 fluorescent dyes (Jackson ImmunoResearch, UK) at a dilution of 1∶400 in blocking solution for 90 minutes at RT. Fluorescent dyes were imaged using a confocal laser-scanning microscope (Zeiss LSM 510, Jena, Germany).
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