Cell culture for Triptolide time course: 24h prior to Triptolide treatment, K562 cells were resuspended in fresh (RPMI) medium at a density of 0.6 x 10 6 cells/mL. On the day of the experiment, cells were recounted, aliquoted in equal cell numbers to 6 T-100 ThermoFisher Tissue Culture Flasks (each flask corresponding to one time point) and treated with Triptolide (Sigma-Aldrich, T3652-1MG) to a final concentration of 500 nM Triptolide. The Triptolide treatment was performed for 0 min, 15 min, 30 min, 1h, and respectively 4h.
Cells cross-linking for ChIP: After Triptolide treatment, K562 cells were cross-linked in 1% CH2O freshly prepared in 1x PBS on the day of the experiment to reach the final concentration of 0.1% CH2O in the media. Following a 5 min incubation at room temperature on a rocking platform, the cross-linker was quenched with 1M Glycine to reach a final concentration of 0.135 M Glycine. Lastly, cells were washed twice in 1x PBS, then harvested and snap frozen on dry ice.