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7 protocols using nkp46 29a1.4

1

Multiparametric Immune Cell Profiling

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Peripheral blood was collected retro-orbitally from isoflurane-anesthetized mice. The blood was treated with ACK lysis buffer for 5 min to remove RBCs, leaving the peripheral blood leukocytes (PBLs). To determine expression of cell surface molecules, we incubated PBLs with mAb at 4°C for 20–30 min, and cells were subsequently fixed for 10 min using Cytofix Solution (BD Biosciences). The following mAb clones were used to stain processed samples: CD11a (M17/4; eBioscience), TLR4 (SA15-21; BioLegend), CD3ε (145-2C11; BioLegend), NK1.1 (PK136; eBioscience), NKp46 (29A1.4; BioLegend), F4/80 (BM8; BioLegend), TLR2 (CB225; BD Bioscience), CD19 (6D5; BioLegend), CD11c (HL3; BD Biosciences), CD4 (GK1.5; BioLegend), Ly6G (1A8; BioLegend), CD127 (A7R34; BioLegend), Ly6C (HK1.4; BioLegend), and CD8α (53-6.7; BioLegend). Flow cytometry data were acquired on a Cytek Aurora (Cytek, Bethesda, MD) and analyzed with FlowJo software (Tree Star, Ashland, OR).
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2

Isolation and Characterization of Murine Immune Cells

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Splenocytes were isolated as previously described(23 ). PBS-perfused kidneys and lungs were minced and digested with collagenase IV (100 μg/ml) for 30 minutes at 37 °C to prepare single cells.
Isolated cells were stained with the following antibodies specific for: TCRβ (H57-597, BioLegend), CD3ε (145-2C11, eBiosciences), CD4(GK1.5, BioLegend), CD8α (53-6.7, eBiosciences), B220 (RA3-6B2, BioLegend), CD25(PC61, BioLegend), I-A/I-E (M5/114.15.2, BioLegend), Nkp46 (29A1.4, BioLegend) for 30min at 4 °C. For intracellular staining, cells were stimulated with 20 ng/ml of phorbol-myristate acetate (PMA, Sigma) and 1 mg/ml of ionomycin(Sigma) for 4 hours, washed and stained with TCRβ, CD4, CD8, I-A/I-E. BD cytofix/cytoperm plus with Golgi stop staining kits (BD Biosciences) were used according to the manufacturer’s protocol. Antibodies of IFN-γ (XMG1.2, BioLegend) and IL-17A (TC11-18H10.1, BioLegend) were used for detecting intracellular cytokines.
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3

Flow Cytometry Immunophenotyping Panel

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TLR9 (J15A7; BD Biosciences; San Jose, CA), IgG1 (MOPC-21; BD Biosciences; San Jose, CA), CD45 (30-F11; BD Biosciences; San Jose, CA), CD11b (M1/70; BD Biosciences; San Jose, CA), CD11c (N418; Biolegend; San Diego, CA), Siglec F (E50-2440; BD Biosciences; San Jose, CA), MHC II (I-A/I-E) (M5/114.15.2; BD Biosciences; San Jose, CA), CD64 (X54-5/7.1; Biolegend; San Diego, CA), F4/80 (BM8 eBiosciences; SanDiego, CA), LY6G (1A8; BD Biosciences; San Jose, CA), CD3 (17A2, BD Biosciences; San Jose, CA), CD90.2 (53–2.1; BD Biosciences; San Jose, CA), CD4 (GK1.5; Biolegend; San Diego, CA) CD8 (53–6.7; BD Biosciences; San Jose, CA), NKP46 (29A1.4; Biolegend; San Diego, CA), CD19 (1D3; BD Biosciences; San Jose, CA), Fc Block(CD16/CD32) (2.4G2; BD Biosciences; San Jose, CA). The NP antibody used was MA1-7322 from Thermofisher (Waltham, MA) conjugated to FITC.
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4

NK Cell-Mediated Cytotoxicity Assay

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NK cells killing experiments were performed as previously described (20 (link)). Briefly, 1 × 106 NK cells were stimulated with IL-15 in the presence of DMSO, JQ1(+) or AZD5153 for 24 h. The cells were washed twice in fresh medium before being added to the NK cell killing assay. In a 96-well round bottom plate 1 × 105 NK cells at an effector-target ratio of 5:1 for 4 h. Target cells were JURKAT (clone E601, ATCC) and K562 (clone CCL-234, ATCC). Lactate dehydrogenase release was measured in 50 µl of supernatant using the Cytotox 96 assay kit (Promega), according to manufacturer’s instructions.
In parallel, NK cell degranulation assay was performed as previously described (21 (link)). Briefly, pre-treated NK cells were cultured with target cells at a 1:5 ratio in the presence of anti-CD107a-Fitc antibody (H4A3, Biolegend) and incubated for 1 h at 37°C. Protein transport inhibitor (eBiosciences) was added for the final 3 h of culture. After staining with anti-CD56, Anexin V and PI, the sample was assessed by flow cytometry on a BD LSR Fortessa™ instrument. For blocking antibody studies anti-IgG1 (12G8G11, BioLegend), anti-NKp30 (P30-15, BioLegend), NKp-44 (P44-8.1, BD), and NKp-46 (29A1.4, BioLegend) were added at the beginning of the assay. Data analysis was performed using the FlowJo program.
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5

Multiparametric Immune Cell Profiling

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Peripheral blood was collected retro-orbitally from isoflurane-anesthetized mice. The blood was treated with ACK lysis buffer for 5 min to remove RBCs, leaving the peripheral blood leukocytes (PBLs). To determine expression of cell surface molecules, we incubated PBLs with mAb at 4°C for 20–30 min, and cells were subsequently fixed for 10 min using Cytofix Solution (BD Biosciences). The following mAb clones were used to stain processed samples: CD11a (M17/4; eBioscience), TLR4 (SA15-21; BioLegend), CD3ε (145-2C11; BioLegend), NK1.1 (PK136; eBioscience), NKp46 (29A1.4; BioLegend), F4/80 (BM8; BioLegend), TLR2 (CB225; BD Bioscience), CD19 (6D5; BioLegend), CD11c (HL3; BD Biosciences), CD4 (GK1.5; BioLegend), Ly6G (1A8; BioLegend), CD127 (A7R34; BioLegend), Ly6C (HK1.4; BioLegend), and CD8α (53-6.7; BioLegend). Flow cytometry data were acquired on a Cytek Aurora (Cytek, Bethesda, MD) and analyzed with FlowJo software (Tree Star, Ashland, OR).
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6

Comprehensive Immunophenotyping and Signaling Analysis

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For IHC, antibodies used were from Cell Signaling Technology for CD31 (#77699S) and for CD8 (#98941S). For immunoprecipitation performed for Western blot analysis, antibodies used were from R&D Systems [Goat-anti-mouse antibody, VEGFR2 (#AF644) and AXL (#AF154)]. For Western blot analysis, antibodies used were from Cell Signaling Technology [VEGFR2 (#9698), pAXL (#5724), and cMET (#4560S)], Thermo Fisher Scientific [pVEGFR2 (#44-1047G) and pMET (#44-88G)] and Abcam [AXL (#ab215205)].
For flow cytometry, antibodies used for surface staining were: PD-L1 (MIH5; Thermo Fisher Scientific), PD-1 (29F.1A12; BioLegend), CD3 (145-2C11; BioLegend), CD11b (M1/70; BioLegend), CD45 (30-F11; BioLegend), CD8 (53-6.7; BioLegend), NKp46 (29A1.4; BioLegend), CD4 (RM4-5; BioLegend), Ly6G (1A8; BioLegend), CD11c (N418; Thermo Fisher Scientific), F4/80 (T45-2342; BD Biosciences), Ly6C (AL-21; BD Biosciences), MHC II (M5/114.15.2; BD Biosciences), CD19 (6D5; BioLegend), and CD25 (PC61; BioLegend). For intracellular staining, the antibodies used were: Arginase 1 (A1exF5; Thermo Fisher Scientific), Foxp3 (FJK-16s; eBioscience), Ki67 (Sola15; eBioscience), IFN (XMG1.2; BioLegend), and granzyme B (GB11; BioLegend).
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7

Comprehensive Immune Cell Profiling

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Antibodies recognizing mouse CD3 (145–2C11), NKp46 (29A1.4), NK1.1 (PK136), CD4(GK1.5), CD8(53–6.7), Ly49A (A1), Ly49C/I (5E6), NKG2D (A10), Ly49G2 (eBio4D11), Ly49H (3D10), NKG2A (20D5), CD11b (M1/70), F4/80 (BM8), CD11C (N418), CD206 (C068C2, Biolegend), Gr1 (RB6-8C5), Ly6C (HK1.4), CD45 (30-F11), CD71 (R17217), CD98 (RL388), KLRG1(2F1,BD) and isotype controls were purchased from eBioscience or BD.
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