The largest database of trusted experimental protocols

38 protocols using gapdh

1

Moschus Modulates PC12 Cell Apoptosis and Autophagy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sichuan Fengchuntang Traditional Chinese Medicine Co., Ltd: Moschus; Chinese Academy of Sciences Type Culture Collection Committee: highly differentiated PC12 cells; Gibco Co.: RPMI-1640 medium (C11875500BT) and fetal bovine serum (FBS) (10099141); Sigma-Aldrich: Glu (56-86-0); Hyclone Co.: Penicillin and Streptomycin (PYG0016); Dojindo Molecular Technologies: cell counting kit-8 (CCK-8) (CK04); BOSTER Biological Technology Co. Ltd: JC-1 assay kit (J6004L) and MitoSOX Red (HY-D1055); MCE: dansylcadaverine (MDC) (HY-D1027) and 3-MA (HY-19312); Suzhou Yuheng Biotechnology Co., Ltd: YF®488-Phalloidin YF®488 (YP0059); Jiancheng Bioengineering Institute: Lactate dehydrogenase (LDH) (A020-2-2) and bicinchoninic acid (BCA) (W041-1-1); Wuhan Sanying Biotechnology Co. Ltd: Bax (50599-2-lg), Bcl-2 (26593-1-AP), GAPDH (60004-1-Ig); Abmart: cleaved caspases-3 (TA7022); Bioss: Beclin 1 (bs-1353R) and SQSTM1/p62 (bs-55207R); Immunoway: LC3B (YT7938).
+ Open protocol
+ Expand
2

Evaluating Metabolic Reprogramming Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Diethylnitrosamine (DEN, 73861), CCl4 (1601168), Oligomycin (O4876), Carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (FCCP, C2920), antimycin A (A8674), rotenone (R8875), 2-deoxy-d-glucose (2-DG, D8375), PNGase F (G5166) and Swainsonine (S9263) and D-(+)-Glucose (G7021) were obtained from Sigma (St. Louis, MO, USA). SYBR green was purchased from Bio-Rad (Hercules, CA, USA). Horseradish peroxidase (HRP)-conjugated anti-rabbit, anti-mouse immunoglobulin G were obtained from Beyotime (Haimen, Jiangsu, China). Glucose deficient DMEM medium and Trizol Reagent were obtained from Life Technologies (Carlsbad, CA, USA). Tunicamycin (B7417) was obtained from ApexBio Technology (Houston, TX, USA). UNC-2250 (S7342) was purchased from Selleck Chemicals (Houston, TX, USA). The antibodies used in this study are: MerTK (abcam; ab52968), Phospho-MerTK (abcam; ab14921), Akt (Cell Signaling Technology; 4691), Phospho-Akt (Ser473) (Cell Signaling Technology; 4060), Phospho-GSK3β (Cell Signaling Technology; 5558S), PGK1 (ZN; 501965), LDHA (ZN; 501146), PFKM (ZN; 505477), PKM2 (ZN; 505477), PDHK1 (Cell Signaling Technology; 3820S), Lamin B (Proteintech; 12987-1-AP), GAPDH (Abmart; M20028) and β-Actin (Proteintech; 60008-1-1 g).
+ Open protocol
+ Expand
3

Western Blot Analysis of Exosomal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein was extracted from exosomes and cells using radioimmunoprecipitation assay (RIPA) buffer (Beyotime) containing Phenylemethanesulfonyl fluoride (Beyotime). A total of 20 μg of protein was separated by sodium dodecyl sulfate ‐ polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were incubated overnight with primary antibodies as follows: CD63 (Abcam, MA, USA), CD81 (Abcam), DUSP1 (Abcam), GAPDH (Abmart, Shanghai, China). The membranes were then incubated with secondary antibodies: anti‐mouse IgG (Abmart), anti‐goat IgG (proteintech Group, IL, USA).
+ Open protocol
+ Expand
4

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein extracts from HCCC-9810, RBE, QBC-939 and HuCC-T1 cells were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. After being blocked with 5% solution of skim milk powder and TBST, the membranes were incubated overnight with primary antibodies against UBA3, ANXA2, N-Cadherin, Vimentin, MEK, ERK,
Ser217/221P-MEK
Thr158/Tyr187P-ERK or GAPDH (Abmart, Shanghai, China), followed by incubation with the secondary antibody (ABMT-PT; Abmart) for 1.5 h at room temperature. Finally, protein bands were visualized with P-ECL luminescent solution (Epizyme Biomedical Technology, Shanghai, China) and band density was analyzed using ImageJ. GAPDH was used as the loading control.
+ Open protocol
+ Expand
5

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells and tissue samples were lysed in RIPA buffer with PMSF as protease inhibitor (Beyotime, Shanghai, China). Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred on NC or PVDF membrane (Millipore, Bedford, MA). After blocking with 5% dry milk in TBST for 2 h at room temperature, the membranes were incubated with the primary antibodies against SDHB (1:1000, Epitomics), β-tubulin (1:4000, Epitomics), β-actin (1:500, Abmart), caspase 3 (1:1000, Cell Signalling Technology), Bcl-2 (1:4000, Epitomics), MMP-2 (1:500, Abcam), FAK (1:1000, CST), p-FAK (1:1000, CST), AMPKα (1:1000,CST), p-AMPKα (1:1000, CST), GAPDH (1:4000, Abmart), P38 (1:1000, CST), p-P38 (1:1000, CST), ERK (1:1000, CST), p-ERK (1:1000, CST), HIF-1α (1:1000, Epitomics) in dilution buffer overnight at 4°C. Membranes were washed for three times with TBST, then were incubated with IRDye 800CW conjugated goat (polyclonal) anti-Rabbit IgG or anti-Mouse IgG (1:10000) antibodies for 1 h at room temperature. The expression of specific proteins was detected through the use of Odyssey system following the manufacturer's instructions.
+ Open protocol
+ Expand
6

Comprehensive Immune Signaling Antibody Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
Puromycin was purchased from Sigma‐Aldrich. GAPDH, β‐actin, GFP, OFP, SHP2, p‐LCK, LCK, p‐AKT (Thr308), AKT, p‐ZAP70, and ZAP70 antibodies for western blot were purchased from Abmart. FGL1 antibodies were purchased from Santa Cruz Biotechnology Inc. Antibodies, including human PD‐L1 and PD‐1 were purchased from Invitrogen. Human LAG‐3 and Na+K+ATPase antibodies were purchased from Cell Signaling Technology and Santa Cruz Biotechnology Inc. respectively. Marker antibodies for exosomes, including anti‐CD9, anti‐CD63, and anti‐ALIX, were purchased from Santa Cruz Biotechnology Inc, and anti‐CD81 from System Biosciences. Wheat Germ Agglutinin (WGA) Alexa Fluor 488 and 350 dyes were purchased from Thermo Scientific. Ficoll Paque Plus used for isolating peripheral blood mononuclear cells (PBMC) cells was purchased from GE Healthcare. Staining antibodies, including CD3, CD4, CD8, CD25, and Foxp3 for FACS analysis were purchased from Biolegend Inc.
+ Open protocol
+ Expand
7

Cardiomyocyte Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue and cultured cardiomyocytes were lysed in 1X lysis buffer (Cell Signaling Technology), protein concentration was measured by bicinchoninic acid assay (Pierce), and extracts were subjected to SDS-PAGE using Novex Tris-Glycine Gels (4–20% gradient gel, Life Technologies) or Mini-protean TGX Gels (4–20% gradient gel, Bio-Rad), transferred to nitrocellulose membranes, and probed with various primary antibodies from Cell Signaling Technology: CHIP (#2080S), Hsc70 (#8444S), Myc (#2276S), GAPDH (#2118S), and α-tubulin (#3878S), AbMart Inc.: p-CHIP S20 (Custom antibody, Shanghai, China; Project: 25011–1), Sigma: ubiquitin antibody (#SAB4503053), and Li-Cor: fluorescence-labeled secondary antibodies (#926-32211, 926-32210, 926-68023, or 926-68022). Gels were imaged (Odyssey, Li-Cor) and band intensity quantified (Odyssey Software 3.1).
+ Open protocol
+ Expand
8

Autophagy regulation mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
RPMI-1640 and DMEM medium and foetal bovine serum (FBS) were obtained from GIBCO (Grand Island, NY). Trizol, PrimeScript RT Master Mix and SYBR green PCR master mix were purchased from Takara (Shiga, Japan). Antibodies against LC-3I/II, p62, VPS34, and HDAC6 were purchased from Cell Signaling Technology (Danvers, USA), antibodies against GFP, GRP78 and acetyl-lysine were from Abcam (Cambridge, UK), and anitbodies against β-tubulin, β-actin and GAPDH were from Abmart (Shanghai, China). The anti-CD63 antibody was purchased from Santa Cruz Biotechnology (Santa Cruz, USA), and the anti-FITC-, -TRITC-, -Cy5- and -HRP-conjugated secondary antibodies as well as ER-Tracker and Lyso-Tracker were obtained from Invitrogen (Carlsbad, USA). Sodium butyrate, vorinostat (SAHA), tubastatin A and 3-methyladenine were obtained from Cayman Chemical (MI, USA). Anti-FLAG M2 mAb and anti-FLAG M2 agarose were obtained from Sigma (St. Louis, USA).
+ Open protocol
+ Expand
9

Western Blot Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins obtained from cultured cells were subjected to electrophoresis, following which they were transferred onto polyvinylidene difluoride membranes. Subsequently, the samples were sealed using 5 % skimmed milk (time: 2 h) at room temperature. Afterward, the protein was incubated with the specific primary antibody. The sample was refrigerated overnight at 4 °C. Following incubation, the samples were washed three times with PBST, with each washing cycle lasting 10 min. Post-washing, the samples were incubated with the secondary antibody (Goat Anti-Rabbit IgG-HRP, 1:5,000, Abmart). Rabbit anti-IFNE (1:1,000, Thermo Fisher Scientific) and GAPDH (1:5,000, Abmart) antibodies were used for the experiments.
+ Open protocol
+ Expand
10

Western Blot Analysis of TGF-β Pathway Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysate was prepared using RIPA buffer with protease inhibitors and quantified using the BCA protein assay (BioTek, China). Protein (20 μg) was loaded onto a 10% SDS-PAGE gel that was then transferred onto PVDF membrane and incubated with anti-TGFβR2 (Bioworld Technology, MN.US), anti-TGF-β1 (Cell Signaling Technology), anti-PI3K (Cell Signaling Technology), anti-p-Akt (p-Ser473, Abzoom), anti-c-myc (Santa Cruz), anti-E2F1 (Santa Cruz), anti-CCND1 (Santa Cruz), anti-p21 (Santa Cruz), anti-E-cadherin (Bioworld Technology, MN.US), anti-Vimentin (Bioworld Technology, MN.US), and anti-Snail (Bioworld Technology, MN.US) at 4°C overnight in blocker (3% non-fat dry milk/BSA in TTBS) followed by incubation with HRP-conjugated secondary anti mouse (ZSGB-Bio, China). Protein was normalized with GAPDH (Abmart).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!