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9 protocols using cd16 percp cy5

1

Flow Cytometric Analysis of PBMC

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Flow cytometric analysis was performed using cryopreserved PBMC. Viability was ascertained by trypan blue exclusion. Cells were washed, and then stained on ice for 20 min with the following fluorescent Abs in various combinations: CD3 (PerCP-Cy5.5 or allophycocyanin) or FITC, anti–TCR-αβ-1-FITC, and anti–TCR-γδ-1-PE (all BD Oncomark); Vα24 TCR-FITC and Vβ11 TCR-PE (Immunotech); CD56-PE, CD107a-PE, CD94-allophycocyanin, CD158b-PE, and CD16–PerCP-Cy5.5 (all from BD Pharmingen); and CD158a–PerCP-Cy5.5 (eBiosciences). After washing, stained cells were fixed in PBS/2% FCS/1.6% paraformaldehyde and acquired on a FACSCalibur flow cytometer (BD Biosciences). For intracellular staining, cells were first surface stained, followed by washing and incubation for 30 min on ice with Fix/Perm buffer (eBioscience). After washing in permeabilization buffer, cells were incubated for 30 min on ice with perforin-PE (Perforin reagent set; BD Pharmingen 556437) or IFN-γ allophycocyanin. The cells were washed again, fixed in PBS/2% FCS/1.6% paraformaldehyde, and acquired. Data were analyzed using Flowjo software (Tree Star, Ashland, OR).
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2

Comprehensive Cervical Cell Phenotyping

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The phenotype of cells collected on the cervical brushes was determined using flow cytometry. Squamous epithelial cells and dead leukocytes absorbed 4′,6-diamino-2-phenylindole (DAPI). Cells that excluded DAPI were examined using directly labelled monoclonal antibodies against the following human proteins: CD45-FITC and CD16-PerCPCy5.5 from BD Biosciences (Franklin Lakes, NJ, USA), CD163-PE, CD11b-PE, CD20-PE, CD14-PerCPCy5.5, HLA-DR-PECy7, CD19-PECy7, CD27-PECy7, CCR7-PECy7, CD11b-APC (activation epitope CBRM1/5) and CD16-APC from eBioscience (San Diego, CA, USA); CD235a-PE, CD68-PE, CD66b-PE, CD103-PE, CD11c-PE, CX3CR1-PE, CCR2-PerCPCy5.5, CD3-PECy7, CCR1-APC, CD4-APC, CD33-APC and CD64-APC from Biolegend (San Diego, CA, USA). Flow cytometric data were collected on an LSRII (BD Biosciences). A minimum of 300,000 events were collected for each group of antibodies so that even a leukocyte population consisting of 0.01% of the total host-derived cells could be reliably detected. Data were analysed using FlowJo 9.6.4 (TreeStar, Ashland, OR, USA).
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3

Cytokine Production in hPBMCs

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hPBMCs were stimulated with K3 CpG (10 μg/mL), cGAMP (10 μM), or K3 CpG + cGAMP for 16 h, with the last 4 h being in the presence of Brefeldin A. After the stimulation, cells were harvested and stained for surface molecules with CD16-PerCP-Cy5.5 (BD Biosciences, Franklin Lake, NJ), CD56-BV421 (BioLegend), CD3-FITC (BD Biosciences), and CD8-PE (Miltenyi Biotech) antibodies. Fixed and permeabilized cells were stained with IFN-γ-allophycocyanin (BioLegend) for the detection of intracellular IFN-γ and analyzed using the BD FACSCANTO II flow cytometer.
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4

Detailed Protocol for Characterizing NK Cell Subsets

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This study utilized frozen PBMC that were previously collected using the Ficoll-Paque method and stored in liquid nitrogen
[24 (link)]. PBMC were thawed in a water-bath at 37°C for one minute and thereafter, washed and re-suspended in RPMI media containing 10% v/v fetal calf serum before surface staining. PBMC viability was evaluated using trypan blue dye and viable cells were counted under microscopy. Minimum cell viability was 80%. Cells were rested for four hours, and subsequently stained with the following anti-human monoclonal antibodies; CD14/19 FITC CD3 Amcyan, CD8 APC-Cy7, CD16 PerCP Cy5.5, CD56 PE Cy7, NKG2D PE and NKp46 APC (BD Biosciences, San Jose CA). At least 50,000 events in the CD3-negative gate were collected. Gating was standardized and set using fluorescence minus one control (FMOs) for CD14/19, CD16, CD56, NKG2D and NKp46. NK cells were identified as CD3-negative, CD14-/CD19- and NK cell subsets were identified by co-expression of CD56 and CD16 on NK cells; CD56bri (CD56++CD16-), CD56INTERMEDIATE (CD56+CD16-), CD56dim (CD56+CD16+) and CD56neg (CD56-CD16+); see Figure 
2. Expression of NK receptors NKG2D and NKp46 was defined by the percentage of NKG2D + and NKp46+ NK cell subsets (Figure 
3).
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5

Comprehensive B Cell Immunophenotyping

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LN tissue was put through a 70 μm (BD Falcon, San Jose, CA) cell strainer to obtain a single cell suspension. Cells were washed with PBS containing 0.01% NaN3 and 0.5% BSA and stained for 30 min at 4°C with directly labelled antibodies: CD45 PercP-Cy5.5, CD19 Alexa-700, CD27 APC-H7, IgD Pe-Cy7, CD20 PE, IgM FITC, CD69 PE, CD69 PerCP, CD21 APC, CD23 PE, CD25 APC, CD267 PE, BAFF-R FITC, CD16 Percp-Cy5.5, CD56 PE, CD55 PE, CD59 FITC (BD Biosciences, Breda, the Netherlands), HLA-DR Alexa-700 (eBioscience, Vienna, Austria), CD3 FITC (Sanquin, Amsterdam, the Netherlands). After incubation cells were washed and immediately analysed on a FACS CANTO II (BD Biosciences). To enable the measurement of different B cell subsets, a seven-colour FACS panel was set-up using antibodies against CD19, IgD, IgM, CD27, CD21, CD23 and CD45 (for normalization). Data were analysed using FlowJo software (Treestar, Ashland, OR, USA) and presented as frequencies, absolute numbers relative to 100 000 CD45+ lymphocytes or geometric mean fluorescence intensity (normalized on negative populations).
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6

Multiparameter flow cytometry of NK cell subsets

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We used the following antibodies in this study: NKG2C-APC, NKG2C-PerCp, NKG2A-PE (R&D); CD3-FITC, CD4-APC-Cy7, CD16-PerCP-Cy5.5, CD56-PE-Cy7, CD107a-APC-H7 (BD Biosciences, San Jose, CA, USA); IFN-γ-BV421 (Biolegend, San Diego, CA, USA); CD4-FITC/CD8-PE/CD3-PerCP (BD Biosciences, San Jose, CA, USA).
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7

Detecting Citrullinated Histones and PAD Enzymes

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Antibodies against Citrullinated Histone H3 (ab5103), PAD2 (ab16478), PAD4 (ab128086), PAD3 (ab183209), Tubulin and β-actin (ACTN05) were purchased from Abcam (Cambridge, UK). The anti-peptidyl-citrulline antibody, clone F95 (MABN328) was from EMD Millipore (Hertfordshire, UK). Antibodies against total histone H3 (1B1B2) and (96C10) were from Cell Signaling Technologies (Hertfordshire, UK). PAD1 (HPA062294) was from Sigma Aldrich (Dorset, UK), and PAD2 (12110-1-AP) was from Proteintech (Manchester, UK). All secondary antibodies used were raised in goat. F(ab')2 anti-Rabbit IgG A647, F(ab')2 anti-Mouse IgG PE (A10543), anti-Mouse IgG A594 (A11032) and anti-Mouse IgG A488 (A11029) were from Thermo Fisher Scientific (UK). Anti-Mouse IgM Texas Red was from VectorLabs (Peterborough, UK) and Anti-Rabbit IgG FITC was from Sigma Aldrich (Dorset, UK).
For flow cytometry, the following mouse anti human antibodies CD3 PEcy7, CD16 PerCP-Cy 5.5, CD19 BV786, CD56 BV650, and CD14 PE were obtained from BD Biosciences (Oxford, UK).
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8

Identifying Neutrophil Subtypes via Flow Cytometry

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Cryopreserved MNC were stained with antibodies specifically targeting myeloid lineage markers (CD14-PE, CD15-FITC and CD16-PerCP-Cy5.5 antibodies, all from BD Biosciences). Neutrophils were identified as CD15+/CD14,28 (link) with additional marker CD16 to indicate the different stages of neutrophil maturation.29 (link)
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9

Enavatuzumab Modulates Immune Responses

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PBMCs from healthy human donors were added to 24-well plates, either alone or into wells that contained SN12C cells that had been plated 24 hrs previously. The cultures were incubated with enavatuzumab or a control antibody (10 μg/mL) for 24 hrs, after which the immune cells were removed to measure activation markers by flow cytometry. Immune cells were stained for monocytes and nature killer (NK) cells with fluorochrome-conjugated antibodies purchased from BD Biosciences: CD3-FITC, CD54-PE, CD16-PerCP Cy5.5, CD14-PE Cy7, CD56-APC, and CD69-APC Cy7. In some experiments, tumor cell cytotoxicity was assessed after 24 hr culture by measuring the level of cytokeratin18 in the supernatant by M65® ELISA (Peviva, Bromma, Sweden), according to the manufacturer's instructions.
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