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Pf 562271

Manufactured by Selleck Chemicals
Sourced in United States, China

PF-562271 is a laboratory instrument designed for conducting chemical analysis and synthesis. It is a versatile piece of equipment that can be used in various research and development applications. The core function of PF-562271 is to facilitate the measurement, separation, and identification of chemical compounds. This device is intended to assist researchers and scientists in their work, but its specific intended use should not be interpreted or extrapolated.

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46 protocols using pf 562271

1

Corneal Injury Repair: PF562271 and Y27632

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PF562271: For systemic administration, PF562271 (selleckchem) was dissolved in 70% DMSO/dH2O and injected i.p. at a dose of 30mg/kg every other day for 14 days following the final corneal injury. Control mice were injected with 70%DMSO vehicle only. For topical application, a 3μl drop of 10mM PF562271 was applied to the ocular surface x2/day for 14 days following the final corneal injury in a 15% DMSO solution (diluted in dH20). Control mice were administered with 15%DMSO vehicle only.
Y27632: For systemic administration, Y27632 (Sigma) was dissolved in saline solution and injected i.p. at a dose of 30mg/Kg every other day for 14 days following the final corneal injury. Control mice were injected with saline vehicle only.
For topical application, a 3μl drop of 10mM Y27632 diluted in saline was applied to the ocular surface x2/day for 14 days following the final corneal injury. Control mice were administered with saline vehicle only.
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2

Inhibition of FAK and MMPs

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DIM was purchased from Sigma-Aldrich (St Louis, MO) and dissolved in DMSO to make a 100 mmol/L stock solution and stored at −20°C in multiple aliquots. PF-562271(N-methyl-N-{3-[({2-[(2-oxo-2, 3-dihydro-1H-indol-5-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl}amino) methyl]pyridin-2-yl}methane sulfonamide), was obtained from Selleckchem (Houston, TX) and dissolved in DMSO to make a 10 μmol/L stock solution and stored at −20°C. Vitronectin was obtained from Life Technologies, Inc. (Grand Island, NY) and dissolved in phosphate buffered saline with calcium and magnesium (0.90 mM CaCl2, 0.49 mM MgCl2, 2.67 mM KCl, 1.47 mM KH2PO4, 137.93 mM NaCl, 8.06 mM Na2HPO4) to make a 0.5 ug/ml stock solution. Antibodies against Phospo-FAK (Tyr397), FAK, MMP-2, MMP-9, pTEN, β-actin were purchased from Cell Signaling.
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3

Chemical Reagents for Signaling Pathways

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Chemical reagents U0126 (Cell Signaling Technology, #9903), PD98059 (Cell Signaling Technology, #9900), Y-27632 (Cell Signaling Technology, #13624), SB431542 (Selleckchem, S1067), CCG1423 (Selleckchem, S7719), verteporfin (Sigma, SML0534). VS-6064 (Selleckchem, S7654), PF431396 (Selleckchem, S7644), PF562271 (Selleckchem, S2890), and Vanadate (New England Biolabs, P0758) were used at doses and times indicated in figure legends. All compounds were dissolved in DMSO.
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4

Survival Pathways of Detached Cells

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To mimic loss of attachment, cells were seeded in culture dishes coated with polyHEMA (Sigma-Aldrich) to prevent cell adherence for various period of time. The cell suspensions were placed into regular culture dishes 16 h prior to end-point viable cell counting. To identify the signaling pathways that promote survival of detached cells, a panel of chemical inhibitors were added in culture medium: PTK2/FAK inhibitor – 0.5 μM PF562271 (Selleckchem, Houston, TX, USA), ERK1/2 inhibitor – 10 μM U0126 (LC Laboratories, Woburn, MA, USA) or 10 μM PD98059 (Santa Cruz Biotechnology, Dallas, TX, USA), AKT inhibitor – 30 μM ZSTK474 (LC Laboratories), TGFBRI/II inhibitor – 10 μM LY210761 (Selleckchem), SRC inhibitor – 3 μM dasanitib (LC Laboratories) or Notch inhibitor – 5 μM DAPT (Selleckchem).
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5

Modulating CAF-Tumor Cell Crosstalk

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Human primary pancreatic CAFs were cultured in DMEM/F12 0.5% FBS overnight before being treated with new DMEM/F12 0.5% FBS ± FAK inhibitor (PF‐562271, Selleckchem, #S2890) at 1 μM for 48 or 72 h. Mouse tumour cells were cultivated a week with 45% DMEM/F12, 45% DMEM and 10% FBS, then a week with DMEM/F12 10% FBS, and finally, cultured in serum‐free DMEM/F12 for 48 h. CM from either CAFs or tumour cells were then harvested and filtered through 0.22‐μm filter (Millipore; SLGS033SS).
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6

Investigating EMT Signaling Pathways

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Anti-α-tubulin and GAPDH antibodies were from Sigma-Aldrich. Antibodies against human EpCAM, total ERK and Thr202/Tyr204-phosphorylated ERK, total AKT, Ser473-phosphorylated AKT, total HGFR, Tyr1234/1235-phosphorylated HGFR, Non-phospho (Active) β-Catenin (Ser45), β-Catenin, E-cadherin, Vimentin, Snail, Slug, and Twist were from Cell Signaling Technology. LY294002 (AKT inhibitor) was also from Cell Signaling Technology. SU11274 (HGFR inhibitor), Crizotinib (HGFR inhibitor), U0126 (MEK inhibitor), PF-562271 (FAK inhibitor), TAPI-1 (ADAM17 inhibitor), DAPT (γ-secretase inhibitor), and BIO (GSK3 beta inhibitor) were obtained from Selleck Chemicals. Crizotinib (HGFR inhibitor) was obtained from Med Chem Express. Antibodies against total GSK3 beta, phosphorylated GSK3 beta (phospho S9), phosphorylated ADAM17 (phospho T735), total ADAM17, phosphorylated presenilin 2/AD5 (phospho S327), total presenilin 2/AD5, V5-tag, 6× His-tag, and c-Myc-tag, as well as the Met (pY1234/pY1235) + total Met ELISA Kit (ab126451) were obtained from Abcam. Human HGFR (c-MET) and HGF recombinant proteins were obtained from Sino Biological. The four mutant Snail constructs were obtained from Addgene.
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7

Investigating ART-mediated Apoptosis Signaling

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ART was purchased from Guilin Pharmaceutical (Shanghai, China), dissolved in dimethyl sulfoxide (DMSO) and stored at − 80 °C. The concentration of DMSO in all experiments was 0.1%. The FAK inhibitor PF562271 was purchased from Selleck Chemicals (Houston, TX, USA). CCK-8 was obtained from BioSharp (Wuhan, China). The PE-Annexin V/7-AAD kit was obtained from BD Biosciences (Franklin Lakes, NJ, USA). TRIzol reagent was purchased form Invitrogen/Thermo Fisher Scientific (Carlsbad, CA, USA). Prime Script RT reagent Kit and SYBR® Premix Ex Taq™ were purchased from Takara (Tokyo, Japan). The BCA protein assay kit was from Pierce/Thermo Fisher Scientific (Waltham, MA, USA). Primary antibodies against FAK (# 3285), p-FAK (# 3283), Akt (# 4691), p-Akt (# 4060), GSK-3β (# 9315), p-GSK-3β (# 9336), β-catenin (# 9562), Bax (# 2772), Bcl-2 (# 3498) and GAPDH (# 2118) were obtained from Cell Signaling Technology Inc. (Danvers, MA, USA). Anti-rabbit secondary antibody IgG H + L (# 5151) was purchased from Cell Signaling Technology Inc.
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8

Adipogenic Differentiation of hMSCs

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hMSCs were seeded into four-well plates and exposed to adipogenic induction media composed of DMEM, 10% fetal bovine serum (FBS), 10% horse serum (Gibco, U.S.A.), 100 µM dexamethasone (Sigma, U.K.), 1 µM Rosiglitazone (BRL) (Novo Nordisk Bagsvaerd, Denmark), 3 µg/ml insulin (Sigma, U.K.), 450 µM isobutylmethylxanthine (IBMX) (Sigma, U.K.), and 1% penicillin-streptomycin (Sigma, U.K.) supplemented with FAK inhibitors (PF-573228 and PF-562271) or IGF-1R/InsR inhibitors (NVP-AEW541 and GSK1904529A), which were purchased from Selleckchem Inc. (Selleckchem Inc., Houston, TX, U.S.A.). Inhibitors were used at 5 µM throughout all experiments. Adipocyte induction medium (AIM) was changed every 2 days and for 7 days. Previous published work from our group indicated day 7 as a time point on which adipogenic markers were up-regulated significantly in an enriched population of 70–80% of adipogenic populations [8 (link)].
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9

Cell Viability Assay with Inhibitors

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Cell viability was estimated by CCK-8 assay kit (5007, Japan) according to the manufacturer’s instructions. Absorbances were read by microplate reader (ELX800, USA) at 490 nm. FAK inhibitor (PF-562271) and AKT inhibitor (MK-2206 2HCl) were purchased from Selleck, China. Cell viabilities were expressed as percentages according to the following formula: (%) = A490 (sample)/A490 (control) × 100.
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10

Cell Viability Assay with Small Molecule Inhibitors

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Small molecule inhibitors were purchased from Tocris Biosciences (R&D Systems): PF-4708671, U 73122, GSK2334470, IPA3, SL0101-1 and XMD 8-92 or from Selleck Chemicals LLC (TX, USA): PF-562271, Enzastaurin (LY317615), AUY922 (NVP-AUY922), 17-AAG (Geldanamycin), PF-04929113 (SNX-5422), AZD6244 (Selumetinib), AT7867, CHIR-98014, LY2228820, BIX 02188, AS703026, PH-797804, SP600125, NU7441. All inhibitors were prepaed in DMSO at 100 mM. Cells were treated with inhibitors prepared in culture media where the final concentration of DMSO was 2% v/v. Vehicle control treatments consisted of culture media containing 2% v/v DMSO. Six days after treatment, cell survival was measured in comparison to vehicle controls using the CellTiter 96® Assay as per manufacturer instructions (MTS assay, Promega Corporation, WI, USA). Data were analyzed in GraphPad Prism® version 5.00 for Windows (GraphPad Software, CA, USA) to measure the log10 of IC50 for each drug. For combination assays, drugs were added simultaneously. Heatmaps for sensitivities (-log10 of IC50) were prepared using D-chip Analyzer software [49 (link)].
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