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14 protocols using maxima sybr green rox qpcr master mix assay

1

Quantitative RT-PCR for Sod2 Expression

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mRNA was isolated from E8.75 embryos using the Trizol reagent (Invitrogen, Calsbad, CA), and then reversed transcribed using the high-capacity cDNA archive kit (Applied Biosystem, Grand Island, NY). RT-PCR for Sod2 and β-actin were performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific, Rockford, IL) in the StepOnePlus system (Applied Biosystem, Grand Island, NY). Primer sequences are listed below, Sod2, forward: 5’-GTTGGGGTTGGCTTGGTTT-3’; reverse: 5’- TAAGGCCTGTTGTTCCTTG-3’; β-actin, forward: 5’-GTGACGTTGACATCCGTAAAGA-3’ reverse: 5’-GCCGGACTCATCGTACTCC-3’.
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2

Quantitative Analysis of miRNA and mRNA Levels

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Total RNA was isolated from embryos or cultured cells using the mirVana miRNA isolation kit (Ambion) and reverse transcribed using the NCode VILO miRNA cDNA synthesis kit (Invitrogen). Real-time PCR for CITED2, β-actin, miR-200b, and small nuclear RNA U6 was performed using Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific). Real-time PCR and subsequent calculations were performed by a StepOnePlus Real-Time PCR System (Applied Biosystem). Real-time PCR primer sequences are listed in Supplementary Table 3.
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3

Quantification of SIRT1-7 Expression

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Total RNA was isolated from embryos or cultured cells using the mirVana miRNA isolation kit (Ambion, Life Technologies, Grand Island, NY) and reverse transcribed using the NCode VILO miRNA cDNA synthesis kit (Invitrogen, Life Technologies, Grand Island, NY). RT-PCR for SIRT1-7 and β-actin were performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific). RT-PCR and subsequent calculations were performed by a StepOnePlus Real-Time PCR System (Applied Biosystem, Foster City, CA).
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4

Quantifying HIF1a, VEGF Expression

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Using the TRIzol reagent, mRNA was isolated from each ovary, and then reversed transcribed using the high-capacity cDNA archive kit (Applied Biosystem, Grand Island, NY). RT-PCR for HIF1a, VEGF and β-actin were performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific, Rockford, IL) in the StepOne Plus system (Applied Biosystem).
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5

Quantitative Transcriptional Analysis

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Total RNA was isolated from tissues and cells using TRIzol reagent (Ambion) and reverse-transcribed using the QuantiTect Reverse Transcription Kit (Qiagen). Reverse transcription for miRNA was performed using the qScript microRNA cDNA Synthesis Kit (Quanta Biosciences). Quantitative reverse transcription polymerase chain reaction (RT-qPCR) of mRNA, pri-miRNA, and small nuclear RNA U6 was performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Fisher Scientific). The primers for RT-qPCR are listed in table S11. RT-qPCR and subsequent calculations were performed by a StepOnePlus Real-Time PCR System (Applied Biosystem).
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6

Cardiac Hypertrophy and Remodeling Markers

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To demonstrate the expression of hypertrophy and cardiac remodeling markers in messenger RNA level, mRNA was isolated from E17.5-day hearts and H9C2 cells using the RNeasy Mini Kit (Qiagen, Hilden, Germany), and reversed transcribed using the High-Capacity cDNA Archive Kit (Applied Biosystems, Grand Island, NY, USA). Real-time qPCR for β-myosin heavy chain (β-MHC), atrial natriuretic peptide (ANP), insulin-like growth factor 1 (IGF1), desmin (DES), adrenomedullin (ADM), connective tissue growth factor (CTGF), osteopontin (OPN), galectin-3 (GAL)3, MMP1, MMP13, TIMP1, TIMP2, TIMP3, TIMP4 COL1a, COL4a, FN1 and β-Actin were performed using the Maxima SYBR Green/ROX qPCR Master Mix Assay (Thermo Fisher Scientific, Waltham, MA, USA) in the StepOnePlus system (Applied Biosystems, Foster City, CA, USA). The primer sequences used are listed in Supplementary Table 1.
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7

Quantitative Analysis of Cardiac TGF-β Signaling

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Total RNA was isolated from E12.5 embryonic hearts using an RNeasy Mini Kit (Qiagen, Valencia, CA). Real-time PCR for TGFβ1, β2, β3, Snai2 (snail homolog 2), CTGF (connective tissue growth factor), GDF1 (growth differentiation factor 1) and β-actin were performed using Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific, Rockford, US). RT-PCR and subsequent calculations were performed by a 7700 ABI PRISM sequence detector system (Applied Biosystem). Primer sequences for RT-PCR are listed in Table 1.
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8

Quantitative RT-PCR Analysis of BMP4 Signaling

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Total mRNA was isolated from E8.5 embryos using the RNeasy Mini kit (Qiagen, Hilden, Germany) and mRNA was reverse transcribed to cDNA using the Quanti Tect Reverse Transcription Kit (Qiagen, Hilden, Germany). Real time-PCR for Bmp4, Id1, Id2, Id3, Id4, Smad6, and β-actin were performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Fisher Scientific; Waltham, MA) in the Step One Plus system (Applied Biosystems, Grand Island, NY). The primers for RT-PCR are listed in Table S2.
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9

RNA Extraction and RT-qPCR Analysis

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Total RNA was isolated from cells or embryonic tissue using the RNeasy mini kit and reverse transcribed using the QuantiTect reverse transcription kit (Qiagen, Hilden, Germany). Real-time polymerase chain reaction (RT-qPCR) was performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific Danvers, MA). The primers for RT-qPCR are listed in Table 1. RT-qPCR and subsequent calculations were performed by a StepOnePlus Real-Time PCR System (Applied Biosystems, Foster City, CA).
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10

Brain Tissue RNA Expression Analysis

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Total RNA was isolated from brain tissue using the Trizol reagent (Ambion) and reverse transcribed using the QuantiTect Reverse Trancription Kit (Qiagen). RT-qPCR for ER chaperone genes and GAPDH was performed using the Maxima SYBR Green/ROX qPCR Master Mix assay (Thermo Scientific). The primers for RT-qPCR are listed in Table 2. RT-qPCR and subsequent calculations were performed by a StepOnePlus™ Real-Time PCR System (Applied Biosystem).
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