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14 protocols using anti cd4 buv395

1

Tracking Naive CD4+ T Cell Migration

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Naive CD4+ T cells isolated from the spleens and lymph nodes of age- and sex-matched DKO (CD45.2+) and congenic WT CD45.1+ B6.SJL-Ptprca mice (The Jackson Laboratory) were labeled with 1 μM CellTracker Green CMFDA (Thermo Fisher Scientific), washed, and mixed at a 1:1 ratio in PBS. 106 total cells were injected into the tail veins of recipient animals. Recipients were euthanized at 1 or 24 h after injection. Cells from blood, spleens, and lymph nodes were harvested, stained with BUV395 anti-CD4 (BD Biosciences; Cat. #563790), V450 anti-CD45.1 (Tonbo; Cat. #75-04530-U025), APC anti-CD45.2 (Tonbo; Cat. #20-0454-U025), and Ghost Dye Red 780 Live/Dead stain (Tonbo; Cat. #13-0865-T100) and analyzed by flow cytometry. Input cells were analyzed in parallel. CellTracker Green was used to distinguish between donor and recipient cells, and WT and DKO were further distinguished by CD45.1/CD45.2 expression. Final ratios were normalized to the corresponding input ratios.
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2

Tracking iNKT Cell Expansion Dynamics

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10uM BrdU was added to the expansions on day 7 and day 21 for 8 hrs. BrdU incorporation was quantified by flow cytometry. The following surface antibodies were stained in Annexin Binding Buffer (BD Biosciences) with BUV395 anti-CD4 (RPA-T4), BV711 anti-CD8α (SK1), BV421 anti-Vα24Jα18 TCR (6B11), and PE anti-Vβ11 TCR (REA559). Cells were washed, fixed, and permeabilized using BrdU staining buffer (Invitrogen), and DNA was degraded with 100U/mL/sample DNase (Qiagen) for 30 minutes at 37°C. For nuclear staining, AF647 anti-Ki67 (11F6) and AF488 anti-BrdU (3D4; both Biolegend) were incubated for 30 minutes at 4°C. Data were acquired by 4-laser LSR® Fortessa (BD Instruments) and analyzed with FlowJo® v10 (TreeStar). To study subset death versus expansion during iNKT cell expansion, BrdU was plotted against both Ki67 and Ghost 510® live-dead cell dye (Tonbo).
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3

Multiparametric Analysis of IL-10-eGFP+ Cells

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For the analysis of eGFP expressing cells from IL-10-eGFP reporter mice, draining (popliteal, inguinal) and non-draining lymph nodes (axillary, brachial, cervical) were isolated, and single-cell suspensions were stained with PerCP5.5-anti-CD25, AF647-anti-CD62L, BUV395-anti-CD4, BUV563-anti-CD43 (all from Becton-Dickinson, Franklin Lakes, NJ, USA), AF700-anti-CD3 (Invitrogen, Waltham, MA, USA), BV711-anti-CD44, PE-Dazzle594-anti-CD11c, BV605-anti-CD11b (BioLegend, San Diego, CA, USA), eFluor450-anti-Gr1, and Fixable Viability Dye eFluor 780 (eBioscience, Frankfurt, Germany).
Data were acquired on a BD FACSymphony A5 flow cytometer (Becton-Dickinson) and analyzed using FlowJo software (TreeStar, Ashland, OR, USA). Exemplary plots showing the gating strategy are shown in Supplementary Figure 2.
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4

Comprehensive Multiparameter Immune Cell Analysis

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Single-cell suspensions of spleen, lymph node, and bone marrow cells were stained with the following antibody panel: PerCP5.5-anti-CD21/CD35, APC-anti-CD11c, AF700-anti-CD19, BV510-anti-CD45R/B220, BV605-anti-CD11b, BV650-anti-IgD, BV711-anti-CD44, BV785-anti-Ter119, PE/Cyanine5-anti-Ly-6G/Ly-6C (GR-1), PE/Cyanine7-anti-CD23 (BioLegend, San Diego, California, United States), BV750-anti-CD5, BUV395-anti-CD4, BUV496-anti-CD3e, BUV563-anti-CD43, BUV615-anti-CD8a, BUV661-anti-CD93, and BUV737-anti-IgM (Becton-Dickinson, Franklin Lakes, United States).
Data were acquired on a BD FACSymphony A5 flow cytometer (Becton-Dickinson) and analyzed using FlowJo software (TreeStar, Ashland, Oregon, United States).
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5

Intracellular Cytokine Profiling of CD8+ T Cells

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The intracellular cytokine assay was performed as previously described [26 (link),30 (link)]. Briefly, CD8+ T cell lines were stimulated with cognate peptide pools or 10 μM individual peptides (Genscript, Hong Kong, China) and incubated for 5 h in the presence of GolgiPlug (BD Biosciences), GolgiStop (BD Biosciences) and anti-CD107a-AF488 (BD Biosciences/eBioscience, Melbourne, Australia). Following incubation, the cells were surface stained for 30 min with anti-CD8-PerCP-Cy5.5 (BD Biosciences/eBioscience), anti-CD4-BUV395 (BD Biosciences), anti-CD14-APCH7, CD19-APCH7 and Live/Dead Fixable Near-IR Dead Cell Stain (Life Technologies, Melbourne, Australia). The cells were then fixed and permeabilised for 20 min using BD Cytofix/Cytoperm solution (BD Biosciences) and intra-cellularly stained with anti-IFN-γ-BV421 and anti-TNF-PE-Cy7 (all BD Biosciences) for a further 30 min. The cells were acquired on a BD LSRFortessa with FACSDiva software (version 6.1.3, BD Biosciences). The analysis was performed using FlowJo software (version 10.7.1, BD Biosciences), where cytokine levels identified in the R0 control condition were subtracted from corresponding test conditions.
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6

Extracellular Vesicle Immunophenotyping

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To 500 µL plasma, 500 µL PBS was added and then centrifuged at 16 000 ×g for 15 minutes at 4°C. The pellet containing MVs was resuspended gently with a cocktail of MitoTrackerDeepRed (Thermo Fisher) and the monoclonal antibodies: anti-CD3-BUV737 (BD), anti-CD4-BUV395 (BD), anti-CD8-BV605 (BD), anti-CD9-PE-Dazzle 594 (BioLegend), anti-CD11b-PE-Cy7 (BD), anti-CD14-BV711 (BD), anti-CD16-APC-H7 (BD), anti-CD41a-BV650 (BD), anti-CD56-APC-R700 (BD), anti-CD61-BV605 (BD), anti-CD62P-BUV395 (BD), anti-CD66b-PerCP-Cy5.5 (BD), anti-CD146-BV421 (BioLegend). Size reference beads (Thermo Fisher) were used to determine MV size and to exclude residual platelets by gating. Liquid counting beads (BD) were used to enumerate MV number. Samples were run on a LSRFortessa (BD) flow cytometer and analyzed with FlowJo software.
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7

Staining CD8+ T Cells with pHLA Tetramers

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p‐HLA tetramers were prepared by conjugating purified biotinylated p‐HLA monomers to streptavidin at a 8:1 monomer to streptavidin molar ratio. Streptavidin‐PE (Invitrogen, Waltham, USA) was added slowly onto the monomer at 1/10 of the volume required and incubated for 10 min at room temperature, 10 times. CD8+ T cell lines were tetramer stained for 1 h at room temperature. Cells were washed and surface stained with anti‐CD3‐BV480 (BD Biosciences), anti‐CD8‐PerCP‐Cy5.5 (BD Biosciences), anti‐CD4‐BUV395 (BD Biosciences) and live/dead fixable near‐IR dead cell stain (Life Technologies). Cells were fixed with 1% paraformaldehyde and acquired on the BD LSR Fortessa and were analysed using Flowjo v10 (BD Biosciences). The gating strategy is shown in Supplementary figure 1b.
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8

T Cell Immunophenotyping by Flow Cytometry

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We applied BD FACSCalibur and BD FACSAria II instruments for FCM detection. BD FACSDiva software and FlowJo software were used for analysis. FCM detection was performed according to the schedule shown in Figure 2C. CD3, CD4, CD8, and CAR expression were evaluated on days 6, 10, and 14, and memory T subsets were evaluated on days 10 and 14. We used His-tagged recombinant CEACAM5 (CEA-His; Sino Biological Inc., 11077-H08H-50) and biotin-protein L (GenScript, M00097) for specific detection of CAR expression. The following antibodies were used: anti-CD3-PE-Cy7 (BioLegend, 300420), anti-CD4-BUV395 (BD, 564724), anti-CD8-BV510 (BioLegend, 344732), anti-CD25-BV421 (BioLegend, 302630), anti-CD45RA-BV421 (BioLegend, 304130), anti-CD45RO-PerCP-Cy5.5 (BioLegend, 304222), AF-647-conjugated IgG fraction of mouse monoclonal anti-biotin (Jackson, 200-602-211) and anti-CD197-PE (BioLegend, 353204).
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9

Single-Cell Isolation of CD8+ T Cells

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CD8+ T cell lines were multimer stained for 1 hr at room temperature. Cells were washed and surface stained with anti-CD8-PerCP-Cy5.5 (BD Biosciences), anti-CD4-BUV395 (BD Biosciences) anti-CD14-APCH7, anti-CD19-APCH7 and Live/Dead Fixable Near-IR Dead Cell Stain (Life Technologies). Cells were either fixed with 1% paraformaldehyde and acquired on the BD LSR Fortessa, or were directly single-cell sorted into PCR plates (Eppendorf) using a BD Aria Fusion. Plates were centrifuged, and stored at −80°C until use.
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10

T Cell Surface Marker Analysis

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For analysis of surface markers, T cells were collected at indicated time points after activation with CD3/CD28 Dynabeads (11131D, Thermo Fisher). For analysis of CD11b expression on T cells, activated T cells were collected at day 8, washed in Flow Cytometry Staining Buffer (00-4222-26, Thermo Fisher) and incubated with anti-CD11b biotin antibody (553309, BD Biosciences; 1:100) for 30 min at 4 °C. Cells where then washed and incubated with anti-CD3 BUV805 (612894, BD Biosciences; 1:100), anti-CD4 BUV395 (563550, BD Biosciences; 1:200) anti-CD8 APC/H7 (566855, BD Biosciences; 1:200) and streptavidin PE (12-4317-87, Thermo Fisher; 1:200) for 30 min at 4 °C in the dark. After washing, cells were resuspended in 200 µL staining buffer containing DAPI (1:10,000) (D1306, Invitrogen).
For STn surface staining, cells were incubated with anti-STn primary antibody (ab115957, Abcam; 1:100) for 30 min at 4 °C. Cells were then washed and incubated with an anti-mouse IgG-FITC secondary antibody (406001, Biolegend; 1:200) for 30 min at 4 °C in the dark. After a final wash step, cells were resuspended in 200 µL of 2 % BSA in PBS with DAPI (1:10,000). Data were collected on a FACSymphony flow cytometer and analyzed using FlowJo (BD Biosciences).
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