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12 protocols using sm0020

1

Mitochondrial Fraction Isolation

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The mitochondrial fraction was prepared using a commercial kit (cat# SM0020, Solarbio, China) in accordance with the manufacturer’s protocol.
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2

Mitochondrial Isolation and Analysis

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The mitochondria were isolated with a mitochondrial extraction kit (Solarbio, SM0020). The cells were lysed with lysis buffer. The supernatant was centrifuged for 10 min at 12, 000g three times, and the mitochondrial precipitate was collected. The mitochondria were washed and resuspended in store buffer. The isolated mitochondrial fraction was used for MMP and LC3II/I protein level determination.
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3

Mitochondrial Enzyme Assay in Cardiac Tissue

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Approximately 100–150 mg fresh heart tissues were weighed, rinsed with cold normal saline to clean the blood, blotted with filter paper, and then cut into pieces. The extraction of mitochondria in the heart was performed using assay kits, according to the instructions of the manufacturer (SM0020, Solarbio, Beijing, China). The concentrations of mitochondrial isocitrate dehydrogenase (ICDHm, BC2165, Solarbio), succinate dehydrogenase (SDH, BC0955, Solarbio), NADP-malate dehydrogenase (NADP-MDH, BC1055, Solarbio), NADH oxidase (NOX, BC0635, Solarbio), and NADPH-cytochrome C reductase (NCR, BC2725, Solarbio) were measured according to the commercial detection kits. The activities of superoxide dismutase (SOD, BC0175, Solarbio), catalase (CAT, BC0205, Solarbio), glutathione (GSH, BC1175, Solarbio), glutathione s-transferase (GST, BC0355, Solarbio), and glutathione peroxidase (GPx, BC1195, Solarbio) were performed using assay kits, according to the instructions of the manufacturer.
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4

Mitochondrial Extraction from Cells

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The mitochondria and cytosol of cells were separated by mitochondrial extraction kit (SM0020, Beijing Solarbio Science&Technology Co., Ltd., China). Briefly, after being trypsinized, cells were rinsed with PBS and centrifuged at 800 g for 10 min. Then cells (5 × 107) were resuspended in 1 ml ice-precooling lysis buffer, following which the cell suspension was grinded 30 times at 0°C in an ice bath using a glass homogenizer (YA0856, Beijing Solarbio Science&Technology Co., Ltd., China). Then the cell homogenate was centrifuged at 1000 g at 4°C for 5 min and the supernatant was collected. After that, the supernatant was collected again and centrifuged at 12,000 g at 4°C for 10 min with cytosol in the supernatant and mitochondria in the bottom.
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5

Brain Extraction and Mitochondrial Isolation

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The experimental animals were deeply anesthetized and transcardially perfused with ice-cold 0.9% saline solution. Following perfusion, half of the brain extracted from the skull was stored at −80 °C and prepared for protein and mitochondrial analysis. The other half of the brain was postfixed in freshly prepared 4% paraformaldehyde (PFA) overnight at 4 °C and then dehydrated in a gradient of 20% and 30% sucrose and 0.1 M phosphate-buffered saline (PBS, pH = 7.4) until it sank and embedded in tissue embedding medium (4583, OCT Compound; Sakura Finetek Tissue-Tek, Tokyo, Japan). Coronal sections (10 μm thick) encompassing the entire cortex and hippocampus were cut with a freezing microtome (CM1860; Leica, Wetzlar, Germany), collected sequentially in 6-well plates filled with 0.01 M PBS and mounted onto slides for immunofluorescence analysis. Uteri were dissected and weighed. The manufacturer's instructions for the mitochondrial extraction kit (SM0020, Beijing Solarbio Science & Technology Co., Ltd.) were followed closely. We obtained high purity mitochondria by the differential centrifugation method. It is worth noting that all of the abovementioned procedures should be performed at a low temperature.
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6

Mitochondria Isolation from Cultured Cells and Tissue

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After cleaning the cells with 1× PBS buffer, they were lysed using M-PER mammalian protein extraction reagent (78501, Thermo Fisher Scientific) supplemented with a Cocktail (11873580001, Roche).
Mitochondria were isolated using a commercial mitochondrial extraction kit, as directed by the manufacturer (SM0020, Solarbio, Beijing, China). 5 × 107 cultivated cells were homogenized for mitochondria isolation. For mitochondria isolation, 100 μg fresh minced tissues from subcutaneous xenografts in nude mice were homogenized.
Protein concentrations were determined using the BCA protein assay kit (23250, Thermo Fisher Scientific) as directed by the manufacturer.
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7

Isolation of Organelles: ER, Mitochondria, Golgi

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The ER, mitochondria (Mito.), and Golgi apparatus were isolated with an ER isolation kit (Solarbio, EX2690), mitochondria isolation kit (Solarbio, SM0020), and Golgi apparatus isolation kit (Solarbio, EX1360-100T) according to the manufacturer’s protocol. Mitochondria-associated membrane was isolated following the protocol as reported previously (79 ).
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8

Mitochondrial Isolation and Analysis

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The prefrontal cortices were homogenized in a 10-fold volume lysis buffer (SM0020, Solarbio, Beijing, China). The homogenate was then centrifuged at 1000× g for 5 min, and the supernatants were centrifuged at 1000× g for another 5 min. Next, the supernatants were centrifuged at 12,000× g for 10 min, and then collected and used as cytoplasmic extracts. The precipitate was then resuspended in wash buffer and centrifuged at 1000× g for 5 min. The supernatant was centrifuged again at 12,000× g for 10 min. Finally, the precipitate was resuspended in store buffer and considered a highly pure mitochondrial extract, which was used to detect the level of MMP and the activity of mitochondrial respiratory chain complexes.
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9

Prefrontal Cortex Protein Extraction and Western Blot

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The mitochondrial and cytoplasmic proteins of the prefrontal cortex were extracted using an appropriate kit (SM0020, Solarbio) and quantified using a BCA kit (CW0014S, CWBIO, Beijing, China). Protein samples were mixed with loading buffer and boiled at 99 °C for 5 min. Protein samples (10 μg) were then separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and transferred onto polyvinylidene difluoride (PVDF) membranes (IPVH00010, Millipore, Billerica, MA, USA) for blocking in 5% skim milk (BD Biosciences, Franklin Lakes, NJ, USA). The membranes were incubated with polyclonal rabbit primary antibodies in blocking solution at 4 °C overnight, including anti-GAPDH (1:60.000, KC-5G5, Kangchen, Shanghai, China) and anti-COXIV (1:1000, 4844, Cell Signaling Technology, Danvers, MA, USA) antibodies. The membranes were then washed three times with PBST and incubated with goat anti-rabbit secondary antibody (1:120,000, KC-RB-025, Kangchen) for 30 min at room temperature. Immunoblotting bands were visualized by incubation with ECL reagent (WBLUF0100, Merck Millipore, Darmstadt, Germany) and exposed to an X-ray film (6535876, Kodak, Rochester, NY, USA).
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10

Mitochondrial Isolation and Enzyme Activity

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Mitochondria were isolated from SH‐SY5Y cells using a cell mitochondria isolation kit (SM0020, Solarbio). The cells were resuspended in precooled lysis buffer. The cell suspension was transferred to a small‐volume glass homogenizer and ground 30 times within an ice bath. The cell suspension was homogenized and centrifuged at 1000 × g for 10 min at 4°C. The resultant supernatant was then centrifuged at 12,000 × g for 10 min at 4°C. The obtained mitochondrial precipitates were resuspended in storage buffer and used immediately. Protein concentrations were determined by BCA assay (Thermo Fisher). Mitochondrial respiration complex activity was measured using the complex I–V enzyme activity microplate assay kit (BC0510, BC3230, BC3240, BC0940, and BC1440; Solarbio). The enzyme activity assays were conducted according to the manufacturer's instructions. Briefly, mitochondrial homogenates were added to the respective reaction buffer. The reaction mixture was transferred to a pre‐warmed quartz cuvette and immediately placed into a spectrophotometer. Mitochondrial complex activity was expressed as nmol/min/mg protein.
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