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13 protocols using p0033

1

Protein Expression Analysis via Western Blotting

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The cells were cultured to 100% confluency and then proteins were extracted using a total protein extraction kit (P0033, Beyotime, China). The protein samples were mixed with loading buffer and then denatured by heating10 min). The samples were resolved in a SDS/PAGE and then transferred into membrane. The membrane was incubated with primary antibodies (anti-AKT, 1:1000; anti-p-AKT, 1:2000, anti-CyclinD1, 1:500, anti-β-Actin, 1:1000; Proteintech) overnight at 4°C. The blots were washed in 1X PBS and then incubated with a secondary antibody for 2 h at room temperature.
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2

Western Blot Analysis of Splenic NK Cells

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Splenic NK cells from control and HSD-fed mice were sorted by FACS. Total protein was extracted according to the manufacturer's instructions (P0033, Beyotime, Shanghai). Protein extracts were separated by SDS-PAGE on 12% polyacrylamide gels and transferred to a PVDF membrane (3010040001, Sigma, MO, US). After blocking with 5% (w/v) BSA at room temperature for 1 h, the membranes were incubated overnight at 4°C with primary antibody (anti-gp91phox, EPR6991; anti-p47phox, ab166930; and β-actin, ab8226) (Abcam, Cambridge, US). The following day, the membranes were washed in PBS and incubated for 1 h with an HRP-conjugated secondary antibody (Beyotime, Shanghai, China). Protein bands were detected using an enhanced chemiluminescence kit (Thermo Scientific, Hudson, NH, USA) according to the manufacturer's instructions.
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3

Subcellular Protein Isolation and Western Blot Analysis

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Nuclear, cytoplasmic (CYT) and plasma membrane (PM) protein of PFC tissues or astrocytes were isolated by commercial kits (KGP1100, KeyGEN BioTECH; P0033, Beyotime Biotechnology). Phenylmethanesulfonyl fluoride (PMSF, a protease inhibitor) was used to inhibit protein degradation. The protein concentration of sample was detected by bicinchoninic acid (BCA) protein assay kit (Thermo scientific). Lysates were loaded into 10% sodium dodecyl sulfate-polyacrylamid gel electrophoresis and subsequently transferred to polyvinylidene fluoride membranes. Membranes were blocked in 5% non-fat milk for 1 h. Then, the following first antibodies were used: GLUT1 (1:5000, ab115730, Abcam), TXNIP (1:1000, #14715, CST), Na, K ATPase (1:1000, #3010, CST), GR (1:1000, #3600, CST), Histone H3 (1:500, sc-517576, Santa Cruz) and β-actin (1:2000, #4970, CST). After incubating with first antibody overnight, membranes were incubated goat anti-mouse IgG (1:5000, HAF007, R&D systems) or goat anti-rabbit IgG (1:3000, #7074, CST) for 1.5 h. Protein bands were visualized by ECL (#180–5001, Tanon) and imaged by chemiluminescence imaging instrument (#5200, Tanon). The gray value of images was measured by ImageJ.
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4

Cell Harvesting and Collection Protocol

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Cells were cultured in 6-well plates and washed with PBS after absorbing the medium. The cells were treated with a cellular digest containing EDTA but without trypsin so that they did not stick to the wall and then dispersed the medium by pipetting over the cell layer surface several times. Cells were collected by centrifugation, supernatant was removed, and cell precipitation was left for later use. Steps followed manufacturer's instructions (Beyotime, P0033).
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5

Tissue Homogenization and Protein Extraction

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The hippocampus and prefrontal cotex were weighed and homogenized in the lysis buffer (P0033, Shanghai Beyotime Biotechnology Co., Ltd, China) at a concentration of 160 μl/mg. The homogenate was placed on ice for 40 min and then centrifuged at 12,000 rpm for 20 min at 4°C. The supernatant was transferred into a new centrifuge tube for later use and the excess samples were stored at −80°C.
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6

Subcellular Protein Fractionation

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Membrane proteins, mitochondrial proteins, nuclear proteins, and cytoplasmic proteins were isolated using subcellular fractionation protein extraction kits (P0033, C3601, P0028, Beyotime, Shanghai, China) according to the manufacturer's instructions. Proteins were analyzed by SDS‒PAGE and immunoblotting.
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7

Cell Membrane Extraction Protocol

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Timing: 2.5 h

When cells have reached 80%–90% confluence, remove medium and add 1 mL trypsin to digest cells. Harvest cells from plate and centrifuge cells at 600 × g for 5 min (Kim et al., 2017 ).

Discard the supernatant, collect the cell precipitation and extract the cell membrane with a cell membrane extraction kit according to the manufacture’s instruction (Beyotime, P0033, https://www.beyotime.com/index.htm).

Determine the protein content in the extracted membrane by BCA kit, and then store the membrane in −80°C refrigerator for future use.

Note: The storage time of the extracted membrane should be no more than 1 month in −80°C refrigerator.

CRITICAL: In order to maintain the biological function, the extracted membrane cannot be lyophilized for storage.

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8

Isolation of Macrophage Membrane from RAW 264.7 Cells

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The macrophage membrane was isolated from the murine macrophages RAW 264.7 cell line. The cells were washed three times with sterile PBS, and then lysed in buffer A (P0033, Beyotime, China) supplemented with phenylmethanesulfonyl fluoride (PMSF, ST506, Beyotime, China) in an ice bath for 10 min. The cell suspension was homogenized in a glass homogenizer for 25 times to disrupt the cell membrane. After centrifuging at 700g, 4 °C (Centrifuge 5418 R, Eppendorf, Germany) for 10 min, the supernatants were collected and further centrifuged at 14,000g for 30 min at 4 ℃. Macrophage membrane was obtained by collecting the bottom sediment.
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9

Protein Extraction and Western Blotting Protocol

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Total proteins were extracted according to the manufacturer’s instructions (P0033, Beyotime). The total protein concentration was determined using a BCA kit (P0010, Beyotime). The proteins were then dissolved in 5 × SDS-PAGE sample buffer (P0015, Beyotime) and heated to 99 °C for 10 min. Equal amounts of proteins were loaded into each well of polyacrylamide gels (6%–15%, Epizyme Biotechnology) for electrophoresis, and then transblotted onto a 0.2-μm polyvinylidene fluoride (PVDF) membrane (ISEQ00010, MerckMillipore). After being washed three times, the membranes were blocked with QuickBlockTM blocking buffer for Western blotting (P0252, Beyotime) at room temperature for 30 min. The blots were then incubated with anti-LETM1 (1:4000, Proteintech), anti-G6PD (1:1000, PTM BIO), anti-PKM2 (1:2000, PTM BIO), anti-OPN (1:2000, ZEN BIO), anti-Osteocalcin (1:500, Biorbyt) or anti-β-actin (1:4000, ZSGB BIO) antibodies at 4 °C overnight, and then with horseradish peroxidase-linked anti-mouse or anti-rabbit secondary antibodies (1:10,000, ZEN BIO) at room temperature for 2 h. The bands were detected with a chemiluminescent horseradish peroxidase substrate (NCM Biotech). The expression of β-actin was used as a loading control.
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10

Myocardial Protein Extraction and Analysis

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Total protein was extracted from the myocardial tissue in the infarct area and the corresponding surviving myocardial tissue or HCMECs by using RIPA lysis buffer. Membrane and cytosol proteins were extracted according to the manufacturer’s instructions (P0033, Beyotime). The bicinchoninic acid (P0011, Beyotime) kit was used to determine the protein concentration. Then, 10% SDS-PAGE was used to separate the cell or tissue lysate. Once the protein transfer step was completed, the PVDF membrane (ISEQ00010, Millipore) was sealed with 5% skimmed milk and incubated with anti-rabbit VE-cadherin (ab205336, Abcam), anti-rabbit PI3K (4257, Cell Signaling Technology), anti-rabbit Phospho-PI3K (17366, Cell Signaling Technology), anti-rabbit AKT (4691, Cell Signaling Technology), anti-rabbit Phospho-AKT (4060, Cell Signaling Technology), and anti-mouse β-tubulin (66240-1-Ig, Proteintech) antibodies overnight at 4 °C. After the samples were washed three times in tributyltin compound buffer, they were incubated at room temperature for 1 h. Finally, the proteins were visualized using the ECL solution (KGP112, Jiangsu Kechuang Biotechnology Co., LTD.). Blot analysis was performed using the Tanon image system (TANON-1600, Tanon).
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