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48 protocols using kh2po4

1

Quantitative Assay of Glutathione S-Transferase

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The detection method of GST activity was modified from a GST activity assay kit from Cayman Chemical, Ann Arbor, MI, USA (item no. 703,302). After cell transfection for 24 h, cells were collected in GST store buffer (100 mM KH2PO4 (J.T.Baker, Radnor, PA, USA), 2 mM EDTA (Thermo Fisher Scientific)) and sonicated on ice. After centrifugation at 10,000× g for 10 min, 4 ℃, then the supernatant was further centrifuged at 100,000× g for 1 h, 4 ℃. The supernatant (cytosol fraction) was analyzed for GST activity in a 96-well plate. Twenty µL supernatant was added into a well with assay buffer (75 mM KH2PO4 (J.T.Baker), 0.075% Triton X-100 (J.T.Baker), 2 mM L-glutathione-reduced form (Alfa Aesar, Haverhill, MA, USA) on ice. After adding substrate 1-chloro-2,4-dinitrobenzene (CDNB) (Alfa Aesar) and mixing well, the OD340 nm values were read by a spectrophotometer at 25 ℃ for 20 min with 1 min interval. GST activity was calculated as [(OD340/min)/0.00503 µM−1] × [0.2 mL/0.02 mL] = nmol/min/mL, then divided by protein concentration (mg/mL) to get the final GST activity (nmol/min/mg).
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2

Semisolid Agar Plate Preparation

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The preparation of semisolid “swimming” agar plates was carried out according to Tremblay et al. [41] (link). M9-medium, consisting of the following salts Na2HPO4, KH2PO4, NaCl and NH4Cl (all purchased from VWR Germany) diluted in aqua dest., and the supplements MgSO4, CaCl2 and glucose-monohydrat were pipetted to 0.3% Bacto agar (BM, Becton) dissolved in aqua dest. The solution was then filled into petri dishes and dried under laminar flow. The semisolid agar plates were used on the same day as preparation. For the motility-tests overnight cultures of the different strains were diluted in fresh LB broth and incubated for additional 2 h at 37°C. 10 µl of this bacterial suspension was inoculated in the middle of a semisolid agar plate and incubated at 37°C for 48 h. Experiments were repeated three times and the reported values represent the average. Error bars reflect the standard deviations.
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3

Cultivation of Streptomyces chartreusis

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S. chartreusis NRRL 3882 was cultivated in chemically defined medium [21 mM NaCl (Carl Roth, Karlsruhe, Germany), 15 mM (NH4)2SO4 (Sigma-Aldrich, St. Louis, MO, USA), 8 mM MgSO4 (VWR International, Darmstadt, Germany), 27 mM KCl (Honeywell International, Morristown, NJ, USA), 50 mM Tris (Sigma-Aldrich, St. Louis, MO, USA), 0.6 mM KH2PO4 (VWR International, Darmstadt, Germany), 2 mM CaCl2 (Avantor, Radnor, PA, USA), 0.01 mM MnSO4 (Honeywell International, Morristown, NJ, USA), 11 mM D-glucose (Thermo Fisher Scientific, Waltham, MA, USA), pH 7.5]. The pH was adjusted to 7.5 with HCl. Amino acids were supplemented at a concentration of 0.78 mM. Glutamic acid was added as mono sodium salt. Cultures were incubated for two weeks at 30 °C and 180 rpm in an Innova orbital shaker. If not indicated otherwise, all experiments were conducted three times independently.
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4

Cultivation and Growth of E. timonensis SN18

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E. timonensis SN18 was purchased from Leibniz Institute DSMZ. E. timonensis SN18 culturing was performed in Hungate or Balch tubes (Chemglass Life Sciences) at 37 °C and set up in an anaerobic chamber (Coy Laboratory Products) under an atmosphere of 2% to 4% H2, 2% to 4% CO2, and N2 as the balance. Standard cultures were grown in peptone-yeast-glucose (PYG) medium, modified (medium recipe DSM 104, DSMZ Germany) that was sparged with N2 after autoclaving. Basal medium lacking electron acceptors was prepared as described previously (57 (link)), containing 1 g/L tryptone (trypticase peptone; BD Biosciences), 1 g/L yeast extract (BD Biosciences), 0.4 mM l-cysteine, 2.5 g/L NaHCO3, 1 g/L NaCl, 0.5 g/L MgCl2•6H2O, 0.2 g/L KH2PO4, 0.3 g/L NH4Cl, 0.3 g/L KCl, 0.015 g/L CaCl2•2H2O, 0.25 mL/L of 0.1% resazurin, and 1% ATCC vitamins and trace mineral solutions (ATCC). NCE medium lacking carbon sources was prepared as described previously (59 (link)), containing 4 g/L KH2PO4, 5 g/L K2HPO4, 3.5 g/L NaNH4PO4 40 mM sodium fumarate dibasic, 1 mM MgSO4•7H2O, 0.1% casamino acids (VWR Life Science), and 1% ATCC vitamin and trace mineral solutions (ATCC). All chemicals were purchased from Sigma-Aldrich unless otherwise indicated.
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5

Transfection of P. falciparum with pfhsp70-1-mCherry

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pfhsp70-1-mCherry was subcloned into a P. falciparum expression vector, pfYC103 as previously reported (Wagner et al., 2013 (link)). The plasmid was purified using a Qiagen Maxi kit and resuspended in CytoMix (25 mM HEPES, pH 7.6, 2 mM EGTA (Sigma), 5 mM MgCl2 (Fisher Scientific), 8.66 mM K2HPO4 (Fisher Scientific), 1.34 mM KH2PO4 (VWR International), 120 mM KCl (Fisher Scientific), 0.15 mM CaCl2 (Sigma)) (Rug and Maier, 2013 (link); Crabb et al., 2004 (link)). For transfection of P. falciparum 3D7, 100 μL ring-stage parasites (14–18 hpi) at 5% parasitemia was resuspended in 300 μL CytoMix containing 75 μg plasmid DNA in a 0.2 cm electroporation cuvette (Bio-Rad). Electroporation was performed at 0.31 kV and 950 μF with maximal capacitance using a Gene Pulser II system (Bio-Rad). The parasites were then cultured in complete medium at 1% hematocrit at 37°C. Selection of transfectants with 200 nM pyrimethamine (Sigma) started at 3 days post-transfection. PfHsp70-1-mCherry expression in transfected parasites was verified by fluorescence microscopy.
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6

Cytochrome c Assay Protocol

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Most chemicals were provided by Sigma Aldrich (Oakville, ON, Canada). EDTA, KCl, K2HPO4, and KH2PO4 were obtained from VWR (Ville Mont-Royal, QC, Canada), cytochrome c from equine heart was provided by Alfa Aesar (Tewksbury, MA, United States), and the protein standard was from Bio-Rad (Mississauga, ON, Canada).
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7

Receptor Solution Preparation Protocol

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For the receptor solution preparation, PBS (free from Ca2+ and Mg2+, VWR), propan-1,2-diol (ACROS OrganicsTM), and sodium azide (VWR) were used. Methanol HPLC grade (Fischer Scientific, Thermo Fischer ScientificsTM, Waltham, MA, USA), KH2PO4 (VWR), and ortho-phosphoric acid (VWR) were used for the chromatographic analysis. Glass beads with 3–5 mm and syringe PTFE filters with a 0.45 µm pore diameter both from VWR. Biological membranes EPISJ13 U (EPISKIN®, Lyon, France) were purchased along with maintenance medium MAIN3.
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8

In vitro Gastrointestinal Digestion Assay

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All reagents used were of analytical grade. All solutions were prepared using ultra-high pure (UHP) 18 Ω water. All laboratory ware was soaked for 24 h in an acid bath containing 10% (v/v) nitric acid and then rinsed with UHP water. Concentrated hydrochloric acid (12 mol L−1), HNO3 69%, NaCl, NH4Cl, anhydrous Na2SO4, CaCl2.2H2O, NaHCO3, anhydrous D ( + )-glucose, sodium arsenate dibasic heptahydrate, cadmium acetate and lead acetate trihydrate were obtained from Fisher Scientific. d-glucuronic acid, Pancreatin (pig), pepsin (pig), Bovine serum albumin (BSA), KSCN, NaH2PO4, mucin (pig), D-glucosamine hydrochloride, lipase (pig), α-amylase (Bacillus species), urea and bile salts (bovine), modified eagle medium (DMEM) containing 4.5 g/L glucose, penicillin-streptomycin solution (10, 000 units penicillin and 10 mg streptomycin per mL), and Hank’s Balanced Salt Solution (HBSS) and glycine were obtained from Sigma–Aldrich (St. Louis, MO, USA). KH2PO4, MgCl2·6H2O, KCl, and uric acid were obtained from VWR. Caco-2 cells (HTB-37™) were purchased at passage 18 from the American Type Culture Collection (ATCC, Manassas, VA, USA). Fetal bovine serum and trypsin-EDTA were purchased from Invitrogen (Burlington, ON, Canada).
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9

Antioxidant Capacity Determination Protocol

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Sodium carbonate (Na2CO3), sodium hydrogen phosphate (Na2HPO4), and potassium dihydrogen phosphate (KH2PO4) were acquired from VWR (Saint-Prix, France). Nitric acid (HNO3) was obtained from Panreac (Barcelona, Spain). Methanol, absolute ethanol (EtOH) and hexane were purchased from VWR Chemicals (Rosny-sous-Bois, France). CO2 was obtained from Carburos Metálicos (Massalfassar, Valencia, Spain). EtOH 96° was obtained from Guinama (La Pobla de Vallbona, Valencia, España). Folin–Ciocalteu reagent, potassium persulfate (K2S2O8), gallic acid, ABTS (2,2-Azino-Bis-3-eThylbenzothiazoline-6-Sulphonic Acid), fluorescein, 2,2-Azobis(2-amidinopropane) dihydrochloride (AAPH), and trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid) were purchased from Sigma Aldrich (Steinheim, Baden-Württemberg, Germany).
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10

Bacterial Cultivation and Manipulation

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Strains and plasmids used in this study are listed in Supplementary Tables 4 and 5. E. coli strains were grown on Luria–Bertani agar (VWR) or in Luria–Bertani broth (VWR) with aeration at 37 °C. S. aureus strains were grown on tryptic soy agar (VWR), in TSB (Difco) or in M9 minimal medium (KH2PO4 3.4 g l−1, VWR; K2HPO4 2.9 g l−1, VWR; di-ammonium citrate 0.7 g l−1, Sigma-Aldrich; sodium acetate 0.26 g l−1, Merck; glucose 1% (w/v), Merck; MgSO4 0.7 mg l−1, Sigma-Aldrich; CaCl2 7 mg l−1, Sigma-Aldrich; casamino acids 1% (w/v), Difco; minimum essentrial medium amino acids 1×, Thermo Fisher Scientific; and minimum essential medium vitamins 1×, Thermo Fisher Scientific) at 200 rpm with aeration at 37 °C, 30 °C or 25 °C. When necessary, culture media were supplemented with antibiotics (100 μg ml−1 ampicillin, Sigma-Aldrich; 10 μg ml−1 erythromycin, Apollo Scientific; and 10 μg ml−1 chloramphenicol, Sigma-Aldrich). Unless otherwise specified, 5-bromo-4-chloro-3-indolyl β-d-galactopyranoside (X-Gal, Apollo Scientific) was used at 100 μg ml−1, IPTG (Apollo Scientific) was used at 0.5 mM and Atc (Sigma-Aldrich) was used at 2 ng ml−1.
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