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13 protocols using gw3965

1

Evaluating NR Ligand Effects

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All NR ligands were reconstituted and stored according to the supplier’s instructions. Cell culture assays were carried out applying 2μM T0901317 (Tocris), 3μM GW3965 (Tocris) or 2.5μM 22(R)-OHC (Sigma-Aldrich). Mice were orally administered 20 mg/kg body weight GW3965 (Tocris) prepared in 0.5% carboxymethylcellulose (CMC) or vehicle only (DMSO in 0.5% CMC) by daily oral gavage.
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2

Reagents and Antibodies for Cell Signaling

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Gefitinib (#G-4408) was obtained from LC Laboratories, Woburn, MA, USA, MI-2-2 was obtained from Chemzon Scientific, Quebec, Canada, and MI-463 and MI-503 were obtained from Wuxi Pharma, Shanghai, China. Doxycycline (#D9891) was obtained from Sigma-Aldrich, Burlington, MA, USA. GW3965 was obtained from Tocris Bioscience, Bristol, UK (#2474). T0901317 (#HY-10626) was obtained from Med Chem Express, Monmouth Junction, NJ, USA. Antibodies for PARP (#9542) and GAPDH (#2118) were purchased from Cell Signaling Technology, Danvers, MA, USA. The antibody for actin (#A5441) was purchased from Millipore-Sigma, St. Louis, MO, USA. The antibodies for menin (#A300-105A used for western blot, and #IHC-00572 used for IHC) were purchased from Bethyl Laboratories, Montgomery, TX, USA. Anti-rabbit and anti-mouse secondary antibodies were purchased from Bio-Rad, Hercules, CA, USA. Lipid-depleted FBS was obtained from Omega Scientific, West Lake Village, CA, USA (#FB-50).
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3

Investigating ABCA1/ApoE in GW3965-induced neurorestoration after stroke

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To investigate whether ABCA1/ApoE mediates GW3965-induced neurorestoration after stroke, ABCA1fl/fl and ABCA1−B/−B stroke mice were randomly divided into 4 groups by a non-team member using the method of drawing different colored balls. Mice were gavaged starting 24h after dMCAo with saline as vehicle control or GW3965 10mg/kg (Sigma) daily for 14 days based on previous dose-dependent study10 (link). After 14 days of treatment, animals were randomly separated into two sets: one set of animals (total 24 mice, n=6/group) were employed for WB and RT-PCR assay; the other set of animals (total 36 mice, n=9/group) were used for behavioral testing, blood-biochemistry, and lesion-volume and immunostaining measurements.
To investigate the effect of HDL on GW3965-induced neurorestoration, ABCA1−B/−B stroke mice were randomly assigned to two groups (total 18 mice, n=9/group) and intraventricularly-infused with artificial cerebrospinal-fluid (CSF, Tocris Bioscience) 100μl as vehicle control, or human-plasma HDL3 (hHDL3, Cell Biolabs Inc.) 25μg in 100μl artificial-CSF by transplanting a micro-osmotic pump (D1002, Alzet) into the right lateral-ventricle initiated at 24h after dMCAo for 14 days. All mice were sacrificed 14 days after dMCAo.
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4

Characterization of Hepatic Cell Lines

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Human hepatoma HepG2 cells were obtained from American Type Culture Collection (Manassas, VA, USA). Human primary hepatocytes (HPH) were obtained from Invitrogen; Thermo Fisher Scientific, Inc. (Waltham, MA, USA). 6E-CDCA was purchased from Abcam (Cambridge, MA, USA). GW4064 and GW3965 were purchased from Tocris Bioscience (Bristol, UK). OCA was provided by Intercept Pharmaceuticals, Inc. (New York, NY, USA). The expression plasmid for human FXRα was provided by Dr Timothy F. Osborne from Sanford Burnham Prebys Medical Discovery Institute (La Jolla, CA, USA). Expression plasmids for human RXRα and LXRα were obtained from GenScript Corporation (Piscataway, NJ, USA).
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5

Cell Culture of Pancreatic Cancer Lines

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BxPC-3 cells were cultured in RPMI 1640 (Gibco, Thermo Fischer Scientific, Waltham, MA, USA 11875085). MIA PaCa-2 and PANC-1 cells were cultured in DMEM (Gibco, 12430047) containing high glucose and HEPES. All media were supplemented with 10% FBS (Gibco, 26140079). All cell lines were cultured in a humidified atmosphere of 5% CO2 at 37 °C. All cell lines were free from mycoplasma contamination and authenticated using short tandem repeat (STR) profiling (ATCC 135-XV). DMSO was purchased from VWR, Radnor, PA, USA (97063-136). GW3965 was purchased from Tocris Bioscience, Minneapolis, MN, USA (2474), 1E5 was synthesized and obtained from OTAVA Chemicals (Concord, ON, Canada) and BPTES was obtained from Cayman Chemicals, Ann Arbor, MI, USA (19284).
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6

Luciferase Assay for PPAR-γ Activation

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HG5LN-zfLxr and HG5LN-zfPparγ cells were seeded at 40,000 cells per well in 96-well white opaque tissue culture plates, and maintained in DMEM supplemented with 5% FCS. Twenty-four hours later, culture medium was replaced with phenol-red and serum-free DMEM containing T0 or GW (GW3965, Tocris, Bristol, UK), and cells were incubated with the ligands for 16 hours. At the end of the incubation, culture medium was replaced with fresh medium containing 0.3 mM luciferin, and luciferase activity was measured for 2 seconds using the Victor X4 Multilabel Plate Reader (Perkin Elmer, Waltham, MA). Nonlinear regression curve fit was used to plot the dose response curves using GraphPad Prism version 5 (GraphPad Software, La Jolla, CA). Experiments were performed in quadruplicate and repeated three times.
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7

Embryonic Xenopus Transcriptome Analysis

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Stock solutions of Bexarotene (Millipore-Sigma), 9-cis retinoic acid (9-cis RA; Millipore-Sigma) GW3965 (Tocris), LG100754 (Tocris), HX531 (Tocris) were prepared in dimethylsulfoxide (DMSO; Millipore-Sigma), aliquoted, and stored in the dark at −20°C. The 9-cis RA was also stored under nitrogen. Embryos were collected, reared, and treated as described previously (Mitchell et al., 2015 (link)) with treatments performed at 28.5°C, beginning at around 52 hpf, and lasting 24 h total. Once the 24-h treatment was complete, embryos were anesthetized, and the heads were surgically separated from the body, anterior to the heart, using dissecting scissors to ensure transcript measurements were from the CNS, and not the yolk sac or region of the developing liver. Any treatment groups showing gross morphology defects and viability affects were noted. At the doses used, the highest dose of LG100754 (2 µM) occasionally affected viability of a few embryos. Heads were immediately transferred to RNA Later (Invitrogen). Heads from three to nine embryos from each treatment group were pooled into RNA Later and stored at −20°C until RNA extraction.
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8

Bile Acid Signaling Regulation

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CDCA, CA, deoxycholic acid (DCA), lithocholic acid (LCA), ursodeoxycholic acid (UDCA), glycine or taurine conjugated bile acids, dimethyl sulfoxide (DMSO), DNA oligonucleotides, fetal bovine serum (FBS), charcoal-stripped FBS, pioglitazone (PGZN) and insulin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Luciferase assay kits were from Promega (Madison, WI, USA). Restriction enzymes were from New England BioLabs (Ipswich, MA, USA). Activated charcoal was from Fisher Scientific (Pittsburgh, PA, USA). GW4064, GW7647, GW3965 and GW0742 were purchased from Tocris Bioscience (Minneapolis, MN, USA). Recombinant human AKR1D1 protein was purchased from Novus Biologics (Littleton, CO, USA).
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9

Isolation and Stimulation of Naïve CD4+ T Cells

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CD4+ T cells from the spleen and peripheral LNs were positively selected with CD4 microbeads (L3T4; Miltenyi Biotec), and naive CD4+ T cells were further sorted as CD4+CD25CD62LhighCD44low cells with the FACSAria III cell sorter (Becton, Dickinson and Company (BD) Biosciences) and stimulated with plate-coated anti-CD3 (1 μg/mL, 145-2C11: BioXCell) and soluble anti-CD28 (1 μg/mL, 37.51; BioXCell) for 3 d in RPMI 1640 (Sigma-Aldrich) supplemented with 10% FBS (Sigma-Aldrich). To measure TCR-mediate protein phosphorylation, flow-sorted naïve CD4+ T cells were stimulated with plate-coated anti-CD3 and anti-CD28 (2 μg/mL) before being analyzed at indicated time points. In some experiments, cells were treated with either DMSO vehicle or 1 µM GW3965 (Tocris), 1 µM BIO (Sigma-Aldrich), or mevalonic acid (Sigma-Aldrich).
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10

Immune Response Analysis in Mice

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For immunization studies, mice were subcutaneously immunized with 50 µg KLH (Sigma-Aldrich) or 100 µg NP-OVA (Biosearch Technologies) emulsified in CFA (Sigma-Aldrich), and lymphoid cells from the draining LNs were stained and analyzed by flow cytometry on day 8 to 10. For viral infection experiments, mice were intraperitoneally injected with LCMV-Armstrong (2 × 105 pfu), and lymphoid cells in the spleen were analyzed on day 8. In some experiments, mice were intraperitoneally treated with either Dimethyl sulfoxide (DMSO) vehicle or 20 mg/kg GW3965 (Tocris).
For BM chimera studies, 8- to 10-wk-old sublethally-irradiated Rag1−/− mice (9 Gy; X-RAD IR160, Precision X-Ray, USA) were i.v. injected 1:1 mixture of WT and Nr1h2−/− BM cells before 6 wk of reconstitution. The recipients were s.c. immunized with KLH in CFA or infected with LCMV, and lymphoid cells from the draining LNs or spleen were analyzed as indicated (46 (link)).
For OT-II T cell cotransfer studies, 1:1 mixture of flow-sorted WT and Nr1h2−/− naïve OT-II T cells (2 × 106 cells) were i.v. transferred into sex-matched B6.SJL congenic recipient mice. One day later, the recipients were s.c. injected with 100 µg OVA (Sigma-Aldrich) emulsified in CFA and lymphoid cells from the draining LNs were analyzed on day 8.
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