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21 protocols using bovine serum albumin bsa

1

Immunofluorescence Staining of Stem Cell Markers

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For immunofluorescence staining, cells were fixed with 4% paraformaldehyde for 15 min at RT and then washed with 1× PBS. The cells were permeabilized with 0.5% Triton X-100 in 1× PBS without Ca2+ and Mg2+ for 10 min and blocked with 1× PBS with 1% bovine serum albumin (BSA; Bovogen, Australia) for 1 h at RT. The cells were incubated with specific primary antibodies, including anti-TRA-1-60 (1:200; Santa Cruz Biotechnology, Dallas, TX, USA, sc-21705) and anti-SSEA4 (1:200; Santa Cruz Biotechnology, sc-21704) at 4 °C overnight. The following day, the primary antibodies were removed and the cells were washed thrice with 1× PBS containing 0.1% Tween 20 for 10 min. Following this process, the cells were incubated with fluorescence-conjugated Alexa Fluor 488 (1:600; Invitrogen, Waltham, MA, USA, A-10680) secondary antibodies to detect the primary antibodies for 1 h at RT. Lastly, the cells were washed three times with 1× PBS containing 0.1% Tween20 and mounted using Vectashield with DAPI (Vector Laboratories, California). Fluorescent signals were observed using a confocal laser scanning microscope (Carl Zeiss, Göttingen, Germany, LSM900) and examined using Zen Blue Software 3.6. The fluorescence intensity was analyzed using ImageJ software v1.53t.
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2

Acetylshikonin Protein Extraction Assay

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After 24 h of treatment with acetylshikonin (0, 1.25, 2.5, and 5 μM), total protein from A498 and ACHN cells was extracted using RIPA buffer (Sigma, St. Louis, MO, USA) with protease and phosphatase inhibitors, PMSF phenylmethylsulfonyl fluoride (Sigma, St. Louis, MO, USA). Proteins were loaded on SDS-PAGE gels with appropriate percentage according to protein size and blotted onto polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). Membranes were blocked with 3% bovine serum albumin (BSA; Bovogen, Victoria, Australia) for 30 min at room temperature (25°C), and immunoblotting was performed with specific primary antibodies at 4°C overnight. Membranes were then incubated with HRP-tagged secondary antibodies for 1 h at room temperature (25°C). Protein bands were visualized by using the enhanced chemiluminescence (ECL; Gendepot, Barker, USA) and detected with Chemi-doc detection system (Bio-Rad, Hercules, CA, USA).
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3

Western Blot Analysis of Cell Signaling Proteins

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Protein was extracted from cultured cells using a lysis buffer (Beyotime) with phosphatase and protease inhibitors (Boster) as described previously [33 (link)]. A total of 30 μg protein was separated by SDS-PAGE and then transferred to polyvinylidene fluoride (PVDF) membranes (Immobilon-PSQ). The membranes were blocked with 5% Bovine Serum Albumin (BSA) (Bovogen), probed with primary antibodies overnight at 4 °C, and then incubated with the relevant secondary antibody for 2 h at room temperature. Electrochemiluminescence (ECL, BioRad) with a detection reagent (Advansta) was used to detect signals. The antibodies used in western blotting included anti-Akt (CST, 9271S), anti-pAkt (CST, 12694S), anti-Erk (CST, 9102S), anti-pErk (CST, 9106S), anti-cyckinD1 (Abcam, ab134175), anti-caspase-3 (Abcam, ab32351), anti-cleaved-caspase-3 (CST, 9664S), anti-P21 (Abcam, ab109520), anti- P27kip1 (Abcam, ab32034), anti-β-actin (Boster, BM5422), anti-rabbit-IgG-HRP (CST, 7074S), and anti-mouse-IgG-HRP (CST, 7076P2).
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4

Fatty Acid Oxidation Measurement in HepG2 Cells

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HepG2 cells were seeded in 24-well plates at a density of 2.5 × 105/well for 24 hours. Subsequently, the cells were loaded with free fatty acids (100 μM palmitic acid and 100 μM oleic acid) containing 0.5% bovine serum albumin (BSA, Bovogen Biologicals, Melbourne, Australia) for 24 hours. The following day, cells were treated with DAPT (5, 10, or 20 μM) or 1 μM GW7647 in DMEM containing 0.45 mM [14C] palmitate (57 mCi/mM; Perkin Elmer) conjugated to 1 mg/ml FA-free BSA for a further 24 hours. The medium was removed to a sealed container and the l4CO2 was extracted by mixing with 0.5 ml 1 M NaOH and 0.5 ml concentrated HCl. The amount of 14CO2 was measured using a liquid scintillation counter. The total protein concentrations of cells were determined for normalization.
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5

MINERVA Protein Binding Assay

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The PIP strips (Echelon Biosciences, Salt Lake City, UT, USA) were blocked with phosphate-buffered saline containing 0.5% (v/v) Tween-20 (Amersham Biosciences, UK) and 3% (w/v) bovine serum albumin (BSA; Bovogen, East Keilor, Australia) for 1 h and incubated with MINERVAFL or MINERVAΔC for 1 h. MINERVAFL bound strips were treated with α-MINERVA rabbit antibody (5122; Cell Signaling Technology, Danvers, MA, USA) for 1 h then with HRP-conjugated α-rabbit IgG goat antibody (A120-101P; Bethyl Laboratories, Montgomery, TX, USA) for 1 h. MINERVAΔC bound strips were treated with HRP-conjugated α-His6-tag antibody (Santa Cruz Biotechnology, Dallas, TX, USA). The strips were washed with the blocking buffer for 5 min three times between each step. The strips were visualized with an ECL kit (Amersham Biosciences, UK).
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6

Xenopus Embryo Development and Microinjection

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Eggs were obtained from female Xenopus laevis by injecting 700 U of human chorionic gonadotropin (HCG). Eggs were in-vitro fertilized using macerated testis. Fertilized embryos were dejelled in 2% l-cysteine (Bio Basic) solution pH 7.8. Embryos were cultured in 0.33% modified Ringer solution. Stage determination of embryo were done according to Nieuwkoop and Faber's table of development. Embryos were microinjected at one cell stage in the animal pole region. For animal cap explant, explants were dissected at 8–8.5 stage and cultured until stage 10.5 or stage 24 in L-15 media (gibco) containing bovine serum albumin (BSA, BOVOGEN) and 50 μg/ml of gentamicin then explants were subjected for further analysis.
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7

Immunofluorescence Staining of AlNP-treated Cells

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Upon the completion of model preparation and AlNP treatment, we fixed the cells with 4% paraformaldehyde at RT for 15 min and washed with PBST three times. For the cell membrane permeabilization, cells were treated with PBST supplemented with 0.1% v/v Triton™-X 100 (Sigma-Aldrich) at RT for 15 min and washed with PBST three times. Next, cells were incubated with PBST supplemented with 2% v/v bovine serum albumin (BSA, Bovogen, Melbourne, VIC, Australia) at RT for 1 h for blocking. Cells were treated with primary antibodies diluted in the blocking solution at their appropriate working dilution ratios and incubated at 4 °C overnight. Cells were rinsed with PBST three times and incubated with secondary antibodies diluted in the blocking solution at 1:200 ratio along with 1% v/v Hoechst. The details of primary and secondary antibodies, including dilution ratios and other information, have been given in Table S1 (Supporting information). Afterwards, cells were washed with PBST five times and visualized by a fluorescence microscope. NIS-Elements software was used to assess the fluorescent intensity.
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8

Neonatal Autopsy and Tissue Collection

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Neonates were autopsied at day post‐infection (DPI) 1, 5, 10 and 20, which equates to postnatal day (PND) 3, 7, 12 and 22. Pre‐perfusion of lung tissues from neonatal/infant animals was not feasible because of tissue fragility and so we standardised throughout to collection of samples from non‐perfused lungs, which hence included marginating immune/inflammatory cell populations present on endothelial surfaces of the lung vascular bed,8, 72, 73, 74, 79, 80, 81 plus a small contribution from occluded blood. Peripheral lung and brain tissue were collected and stored in either cold PBS + 0.1% bovine serum albumin (BSA; Bovogen Biologicals, Melbourne) for flow cytometric analysis, or RNAlater® Stabilization Solution (Sigma‐Aldrich, St. Louis) for analysis of gene expression profiles and viral titres. Samples collected into RNAlater® were stored overnight at 4°C, then transferred to 1.5‐mL Eppendorf tubes (Eppendorf) and frozen at −80°C for future analysis.
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9

Intracellular Calcium Signaling Analysis

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Reagents were purchased from the following suppliers: monocyte chemotactic protein-1 (MCP-1), SK&F96365, 2-aminoethyl diphenylborinate (2-APB), NP-40, Cs aspartate, CsOH, EGTA, HEPES, anti-beta actin antibody, 4′,6-diamidino-2-phenylindole (DAPI), thapsigargin (TG) and mouse anti-KCa3.1 antibody (Sigma, USA); ryanodine and DyLight 650-conjugated donkey anti-mouse secondary antibody (Abcam, UK); rabbit anti-Orai1 antibody (Alomone Labs, Israel); mouse anti-STIM1 antibody (Abnova, USA); bovine serum albumin (BSA) (Bovogen, Australia); anti-fluorescence quenching agent (Dako, Denmark).
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10

Isolation and Characterization of Extracellular Vesicles

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Pyrrole, branched polyethyleneimine (PEI, molecular weight, ~25,000), iron oxide (II, III), poly(sodium-4-styrenesulfonate) (PSS), 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC), N-hydroxysuccinimide (NHS), streptavidin, and Triton X-100 were obtained from Sigma-Aldrich. AAO membrane of 200 nm pore diameter (Anodisc 13) was purchased from Whatman (Maidstone, UK). Biotinylated-anti-EpCAM, biotinylated anti-EGFR, biotinylated-anti-N-cadherin, biotinylated-anti-TROP-2, biotinylated anti-vimentin, anti-EpCAM, and anti-CD44 were obtained from R&D Systems (Minneapolis, MN, USA). CD45 antibody was purchased from Abcam (Cambridge, United Kingdom) and bovine serum albumin (BSA) was obtained from Bovogen (Keilor East VIC, Australia). Alexa 488-goat anti-mouse IgG, Alexa 568-goat anti-rabbit IgG, Alexa 647-goat anti-rabbit IgG, Hoechst 33342, and penicillin/streptomycin (P/S) were purchased from Thermo Scientific (Waltham, MA, USA). Phosphate-buffered saline (PBS), Dulbecco's modified Eagle's medium (DMEM) and Roswell Park Memorial Institute (RPMI)-1640 medium were obtained from WelGene (Daegu, Korea).
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