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Nub-Gal4 is a genetic tool used in Drosophila research. It is a Gal4 driver line that expresses the yeast transcriptional activator Gal4 under the control of the nubbin (nub) gene promoter, which drives expression in the wing imaginal disc and developing wing blade.

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11 protocols using nub gal4

1

Drosophila Strain Maintenance and RNAi

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For most experiments Drosophila strains were cultured in standard cornmeal-agar medium (#789211, NutriFly BF, Genesee Scientific) and maintained at 25 °C. The RNAi experiments were performed at 28 °C as previously described [35 (link)]. The sauz2217 mutant strain was described previously [35 (link), 67 (link)]. UAS-dGOLPH3 RNAi (#46150, [35 (link)]) and UAS-Tctp RNAi (# 26632) were obtained from the Vienna Drosophila Resource Center Collection (VDRC, [44 (link)]). The following fly strains were from the Bloomington Drosophila Stock Center (BDSC, Indiana University, Bloomington, IN, USA): UAS-Rheb (#9689), UAS-GFP (#4775), Df(2L)Exel7010 (#7782), en-Gal4 (#30564), nub-Gal4 (#86108), ey-Gal4 (#5534), elav-Gal4 (#8765), and bam-Gal4 (#80579, [68 (link)]). The following fly strains were obtained from FlyORF (University of Zurich, [69 (link)]): UAS-dGOLPH3-HA (#F002769), UAS-Tctp-HA (#F002479), UAS-14-3-3ζ-HA (#F001064). bam-Gal4 and tub-Gal4/tub-Gal80ts (gift of Dr. Timothy Megraw, Florida State University, USA) were used to deplete dGOLPH3 respectively in spermatocytes and in larval/pupal tissues and to express dGOLPH3-HA, Tctp-HA, and 14-3-3ζ-HA proteins. The fly strains expressing either GFP, or fluorescent tagged-dGOLPH3 were described previously: GFP [34 ], dGOLPH3-RFP [34 ], GFP-dGOLPH3 [35 (link)], and GFP-dGOLPH3K167A/R170L [35 (link)].
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2

Genetic Manipulation of Drosophila Development

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Tefu(dATM)RNAi (V22502), mei-41(dATR)RNAi (V103624), grapes(dChk1)RNAi (V12680), Loki (dChk2)RNAi (V110342), dp53RNAi (V38235) and basket(dJNK)RNAi (V104569) lines were obtained from the Vienna Drosophila Resource Center (VDRC), and UAS-p53H159N (BL8420) line from the Bloomington Stock Center. his1RNAi (31617R-3) line was obtained from NIG-FLY and is described in ref. 11 (link). GFPRNAi and hp1aRNAi lines are described in ref. 61 (link). nub-GAL4 and UAS-Dic2 were kindly provided by Dr. Casali and are described in Bloomington Stock Center. UAS-puc2A was kindly provided by Dr Martín-Blanco. UAS-RNH1 (human) line was prepared by subcloning the corresponding cDNA from pcDNA3-RNH163 (link) into pUAST, and injected for random integration into w1118 embryos.
dH1 depletion was induced in the pouch region of the wing imaginal discs and in polytene chromosomes using his1RNAi; nub-GAL4; UAS-Dic2 flies by themselves or combined with either additional RNAi lines or overexpression constructs. Similarly, HP1a depletion was induced in the same tissues using hp1aRNAi; nub-GAL; UAS-Dic2 flies. To analyze wing phenotypes, wings were prepared and recorded as described11 (link). Wing images were measured and analyzed using FIJI software64 .
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3

Drosophila Mutant Strain Catalog

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y w was used as a wild-type strain. The following mutants and transgenic lines were used: nos-gal4VP16[14] (link) from R. Lehmann (New York University, New York, NY, USA); nub-gal4 and ap-gal4[15] (link) from T. Hayashi (NIG, Mishima, Japan); UAS-H2B-ECFP[16] (link) from S. Kondo (NIG, Mishima, Japan); UAS-EgfrDN[17] (link) from M. Freeman (MRC Laboratory of Molecular Biology, Cambridge, UK); UAS-pav-GFP[18] (link) from Y. M. Yamashita (University of Michigan, Ann Arbor, MI, USA); bam-GFP[19] (link) from D. McKearin (HHMI, Chevy Chase, MD, USA); and argosdelta7[20] (link) from the Bloomington Stock Center (Indiana University, Bloomington, IN, USA). goe5–11 and goe331 alleles were generated by imprecise excision of a P element, EY01697, inserted in the 5′UTR of goe.
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4

Drosophila Larval Neurogenesis Assay

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Flies were cultured with standard food in plastic vials at 25 °C. 3rd instar wandering larvae were analyzed in all the experiments. Fly strains are used as follows: nub-gal4 (Bloomington Drosophila Stock Center [BDSC] #42699), rn-gal4GAL4-5 (BDSC #7405), UAS-CD8-PARP-Venus (gift from Yasushi Hiromi)50 (link), UAS-bsk-RNAi (National Institute of Genetics [NIG] #5680R-2), slit2 (Drosophila Genomics and Genetic Resources [DGGR] #106948)51 (link), UAS-slit-RNAi (BDSC #31468), robo22 (DGGR #106843)42 (link), UAS-robo2-RNAi (BDSC #34589), slit05248 (slit-lacZ, BDSC #12189)52 (link),53 (link), UAS-slit (gift from Tom Kidd), UAS-robo2-HA (gift from Talia Volk), wg1 (BDSC #2978)54 , wgSP-1 (BDSC #405)55 ,56 , dppd6 (DGGR #106644)57 (link), dpps11 (DGGR #106646)57 (link), dpphr92 (DGGR #106649)58 (link), TRE-DsRed (BDSC #59012)48 (link), P{PZ}dpp10638 (dpp-lacZ, BDSC #12379)52 (link).
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5

Drosophila Genetic Tools and Fly Maintenance

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GMR-Grim, UAS-p35, and Gal4 drivers including ptc-Gal4, nub-Gal4, GMR-Gal4, en-Gal4, and act-Gal4 were obtained from Bloomington Drosophila Stock Center (USA). UAS-ana3 RNAi line was obtained from VDRC (V101280). Ubq-ana3-GFP, UAS-ana3-GFP, and ana3SH0558 flies were kindly provided by Jordan W. Raff. UAS-sona lines were generated in our laboratory (Kim et al., 2016 (link)). Flies were incubated at 25°C unless otherwise indicated.
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6

Comprehensive Drosophila Genetics Toolkit

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The stocks used in this study include the following lines from the Bloomington Stock Center: R15B03-GAL4 (BL49261); G-TRACE (BL28280, 28281) (Evans et al., 2009 (link)); UAS-FLP, Ubi-FRT-stop-FRT-GFPnls (BL28282); pdm3-GFP (BL60560); grn-GFP (BL58483); ptc-GAL4 (BL2017); tub-GAL80ts (BL7108); dpp-GAL4 (BL1553); dpp-GAL4, tub-GAL80ts, UAS-dCas9.VPR (BL67066); nub-GAL4 (BL25754); hh-GAL4 (Tanimoto et al., 2000 (link)); ap-GAL4 (BL3041); fng-Gal4 (BL9891); htl-GAL4 (GMR93H07-GAL4, BL40669) is an enhancer within the first intron of the htl gene; UAS-smoRNAi (primarily BL43134, but also BL27037, 62987 in Figure 5—figure supplement 2); UAS-NrtRNAi (BL28742). Drosophila stocks from other labs: UAS-ths and UAS-pyr (A Stathopoulos); UAS-ci3m (D Kalderon). TRiP-CRISPR driven overexpression of pyr was conducted with a guide RNA that targets the upstream transcriptional start site, P{TOE.GS00085}attP40 (BL67537), and works together with a nuclease-dead Cas9 fused with a transcriptional activator domain, UAS-dCas9.VPR to cause gene activation (BL67055) (Lin et al., 2015 (link)).
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7

Genetic Manipulation of Drosophila Stocks

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Fly stocks were cultivated on standard media in uncrowded conditions at 25°C unless otherwise stated. The following stocks were obtained from Bloomington Stock Center: Tub-GAL4 (P{w+mC= tubP-GAL4}LL7 originally from stock 5138, y1w*;; P{w+mC= tubP-GAL4}LL7/TM6b,GFP), act5C-GAL4 (stock 4414, y1w*; P{w+mC= act5C-GAL4}25FO1/CyO, y+;), nub-GAL4 (stock 25754; P{UAS-Dcr-2.D}1, w1118; P{GawB}nub-AC-62), 69B-GAL4 (stock 1774; w*;;P{GawB}69B), UAS-idgf1RNAi (stock 57508, y1sc*v1; P{TRiP.HMC04823}attP40), UAS-idgf2RNAi (stock 55935, y1sc*v1; P{TRiP.HMC04223}attP40), UAS-idgf3RNAi (stock 67226, y1sc*v1; P{TRiP.HMC06327}attP40), Df(3L)Exel6084 (stock 7563, w1118;; Df(3L)Exel6084, P{XP-U}Exel6084/TM6B). Stocks obtained from the Vienna Drosophila Resource Center were: UAS-dis3L2RNAi (stock v51854, w1118; P{GD9240}v51854; and stock v100322,;; P{KK105902}VIE-260B) and Dis3L2CD (stock 312503). en-GAL4 (A kind gift from Paul Martin,; engrailed-GAL4,UAS-GFPactin/Cyo;). To overexpress Dis3L2 the stock w*;; P{GSV3}GS6090/TM6 was purchased from the Kyoto Stock Center (stock 200902), however, a mutation outside the Df6084 locus caused homozygous lethality; this was repaired by recombination.
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8

Genetic tools for Drosophila Wnt signaling

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UAS-GFP-wg[27] (link), UAS-DFz2 and UAS-DFz2N[28] (link), UAS-Dlp-HA[16] (link), wg{KO; Gal4}[29] (link), wg{KO; wg-HA}[30] (link), wgcx4, sfl03844, Df(3R)Exel6193, Df(3R)BSC527, Df(3R)BSC619, Mi{ET1}CG13830MB00767, neur-lacZ (neurA101), UAS-Shits, UAS-lacZ, UAS-myrRFP, UAS-FLP, tub-p-Gal4, ap-Gal4, en-Gal4, hh-Gal4, ptc-Gal4, MS1096-Gal4, and nub-Gal4 were obtained from the Bloomington Drosophila Stock Center. The cow allele was generated by imprecise excision of the Minos transposable element Mi{ET1}CG13830MB00767 from the 3′-UTR of cow (see Figure S1A).
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9

Drosophila Genetic Manipulation Protocol

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Ex-lacZ (#44248), nub-GAL4 (#25754), tubP-GAL80ts (#7017) and scrib2 (#41775) were obtained from the Bloomington Drosophila Stock Center (BDSC). Scrib:GFP (CA07683) was obtained from Fly Trap projects (Morin et al., 2001 (link)). αCat:GFP (#115921) was obtained from Kyoto Stock Center. Fly stocks were maintained at 25°C unless otherwise mentioned. To induce MARCM clones, larvae were heat-shocked for 2 h at 37°C 3 days after egg laying, and samples were collected 2 days after heat shock. Larvae and adults for conditional knockdown mediated by nub-GAL4 were maintained at 27°C after egg laying.
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10

Drosophila Genetic Toolkit for Research

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Stocks used in this study include the following: hsFLP; act<stop<Gal4, UAS-ykiS168A.v5, hsFLP;act<stop<Gal4, UAS-RFPNLS, hsFLP, UAS-GFPNLS; tub-Gal80, FRT40A (MARCM FRT 40A), ubi>RFP, FRT40A, banΔ1, banGFP, en-Gal4, dpp-lacZ, UAS-RFP, AP-1-RFP (53 (link)), and TIE-DYE (50 (link)). Stocks were obtained from the Bloomington Drosophila Stock Center (BDSC): UAS-ykiS168A.v5 (#28818), UAS-yki.v5 (#28819), UAS-yki::GFP (#28815), wtsX1 (#44251), smo3 (#3277), UAS-ciRNAi (#64928), tara1-lacZ (#6403), UAS-taraRNAi (#31634), nub-Gal4 (#42699), 30A-Gal4 (#37534), UAS-dMyc (#9674), UAS-rasv12 (#4847), and UAS-jnkDN (#9311). Ci-lacZ was a gift from D. Kalderon (Columbia University, USA). UAS-bantamsponge and UAS-bantam.D were gifts from S. Cohen (University of Copenhagen, Denmark). hs-Pc-sensor was a gift from V. Pirrotta (Rutgers University, USA). UAS-myc::tara was a gift from R. Smith-Bolton [University of Illinois, Urbana-Champaign, USA (originally from M. Cleary, University of California, Merced, USA)]. MARCM FRT19A and sd47M, FRT19A were gifts from D. Pan.
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