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4 protocols using ca 94010

1

Immunofluorescence Analysis of Neural Markers

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For immunofluorescence analysis, 25 μm serial cryosections were obtained using a CM3050 cryostat (Leica Microsystems, Wetzlar, Germany). After incubation in a blocking buffer (1 × PBS/1% bovine serum albumin/0.3% Triton X-100) for 1 hr at room temperature, sections were incubated with the following primary antibodies overnight in PBS at 4°C: mBDNF (ab75040, Abcam), pTrkB (ab131483, Abcam), TH (sc25269, Santa Cruz Biotechnology, Inc), DAT (sc32259, Santa Cruz Biotechnology, Inc), BrdU (MCA2483, Bio-Rad, Hercules, CA, USA), NeuN (ABN78, Millipore Corporation), and Iba1 (019–19741, Wako Chemicals, Richmond, VA, USA). Sections were washed with PBST and incubated with fluorescent secondary antibodies (A11001, A11007, or A11037, Invitrogen, Carlsbad, CA, USA; CA94010, Vector Laboratories, Inc, Burlingame, CA, USA) for 2 hr at room temperature. Sections were mounted onto slides using a mounting medium (H-1200, Vector Laboratories, Inc) and imaged using a fluorescence microscope (Carl Zeiss Imager M1, Carl Zeiss AG, Oberkochen, Germany). Immunofluorescence was analyzed using the IMT i-Solution Inc 10.1 (17TH-5989 Walter Gage Rd., Vancouver, BC, CA) image analysis software.
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2

Immunostaining of Intestinal Tissue

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For immunostaining, intestinal tissues were fixed in 4% paraformaldehyde in PBS at 4°C for overnight and then were embedded in optimal cutting temperature compound (OCT) (Sakura Finetek). 7-µm-thick frozen sections were boiled in 50 mM sodium citrate buffer solution (pH=6.0) for antigen retrieval, then were blocked using 1% BSA in PBS at room temperature for 1 hour. Subsequently, the sections were incubated with primary antibodies in PBS with 1% BSA at 4°C for overnight, and then incubated with secondary antibodies in PBS with 1% BSA at room temperature for 1 hour. The primary antibodies included rabbit anti-EpCAM (1:200; ab71916; Abcam), rabbit anti-mouse IgA secondary antibody (1:1000; NB7506; Novus) and rabbit anti-Claudin-7 (1:200; 34-9100; Thermo Fisher Scientific, Inc.). Immunohistochemical analysis was performed with biotin-conjugated goat-anti-rabbit secondary antibody (JAC-111-065-144, Jackson ImmunoResearch), HRP-ABC complex (CA 94010, VECTASTAIN) and DAB (LF778, DOJINDO Laboratories), and immunofluorescence analysis was performed with Alex Fluor 488-labeled secondary antibodies (Invitrogen). The immunostaining images were observed using the PerkinElmer Automated Quantitative Pathology System.
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Blastocyst Apoptosis Quantification via TUNEL

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In a TUNEL assay, when genomic DNA is cleaved, a fluorescein (FITC)-labelled dUTP molecule (fluorescein-dUTP) is transferred to the exposed 3′-OH, and the transfer is catalysed by terminal deoxynucleotidyl transferase (TdT). The fluorescence can then be observed by microscopy or flow cytometry, and thus, apoptotic cells can be identified. Briefly, blastocysts were washed three times in PBS with 0.1% PVA and were fixed in 4% paraformaldehyde solution overnight at 4°C. Embryo membranes were permeabilised in 0.5% TritonX-100-PBS-0.1% PVA for 1 h at room temperature. Then, fixed embryos were incubated in TUNEL reaction medium (In Situ Cell Death Detection Kit, Fluorescein; Roche) for 1 h at 37.5°C in the dark. After the reaction was stopped, the embryos were washed in PBS-0.1% PVA three times and mounted on glass slides with DAPI (CA 94010, Vector laboratories, Inc. Burlingame, USA) for total cell counts. Whole-mount embryos were examined under a fluorescence microscope (FV1000, Olympus) with TUNEL and DAPI staining. The apoptotic rate was calculated as follows: apoptotic rate = (number of TUNELpositive nuclei/total number of nuclei) × 100%.
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4

Immunofluorescence Analysis of Blastocyst Lineage

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Blastocysts were fixed in 4% paraformaldehyde, permeabilised using 0.5% Triton-100 in PBS, blocked in 1% BSA-PBS-0.1% PVA for 1 h at room temperature and incubated with anti-OCT4 antibody (1:400; Santa Cruz Biotechnology) and anti-CDX2 antibody (1:200; BioGenes, Berlin, Germany) overnight at 4°C. DNA was denatured with 4 M HCl for 10 min, neutralised with pH 8.0 Tris-HCl for 15 min, blocked in 1% BSA-PBS-0.1% PVA overnight and incubated with anti-5mC antibody (1:200; Abcam) and anti-5hmC antibody (1:500; Abcam) for 1 h at room temperature. After washing with PBS-0.1% PVA, the reaction was continued using Alexa Fluor 594 Goat Anti-Rabbit IgG Antibody (anti-rabbit; Invitrogen) and Alexa Fluor 488 Goat Anti-Mouse IgG Antibody (anti-mouse; Invitrogen) at a 1:1000 dilution for 1 h at room temperature. After the reaction was stopped, the embryos were washed in PBS-0.1% PVA and mounted on glass slides with mounting medium for fluorescence staining with DAPI (CA 94010, Vector Laboratories, Inc.) followed by total cell counts. Embryos were imaged immediately on an epifluorescence microscope. The number of ICM and TE cells was determined according to the number of cells positive for immunofluorescence-labelled OCT4 and CDX2, respectively. The fluorescence intensity of 5mC and 5hmC labelling was analysed using ImageJ software.
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