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3 protocols using n acetylaspartic acid

1

Differentiated iBACs Aspartate Quantification

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Differentiated iBACs (day 7–8 of differentiation) were harvested in homogenization buffer (PBS pH 8.5, 1 mM DTT, 10% glycerol) and sonicated 3× for 5 s. Cell homogenates were centrifuged for 10 min/10000 × g/4 °C and supernatants were collected. An equal amount of 2× reaction buffer (dH2O pH 8.5, TrisHCl 100 mM, NaCl 100 mM, CaCl2 5 mM, DTT 0.2 mM, IGEPAL CA-630 (1%, Sigma) 0.5%, N-acetylaspartic acid (Sigma) 40 mM) was added to the samples and a defined volume per sample was collected to provide the same background matrix for the aspartate standard curve. The background matrix was heated at 95 °C for 10 min and subsequently centrifuged for 3 min/16000 × g/4 °C. The background supernatant was collected and all samples and background sample were incubated for 18 h/38 °C/350 rpm in a thermomixer. After incubation, all samples were inactivated at 95 °C for 10 min and subsequently centrifuged for 3 min/16000 × g/4 °C. Supernatants were used for analyzing released aspartate content using the aspartate assay kit (BioVision).
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2

Metabolite Quantification for Biochemical Analysis

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Creatine (Sigma Aldrich, C0780), creatinine (Sigma Aldrich, 1052060050), taurine (Sigma Aldrich, T8691), guanidine acetate (Sigma Aldrich, 50,920), carnitine (Sigma Aldrich, C9500), 4-quinolinecarboxylic acid (Sigma Aldrich, 174823), quinoline-2,4-dicarboxilic acid (Sigma Aldrich, 8151030025), DL-2-aminoadipic acid (Sigma Aldrich, A0637), N1-acetylspermidine (Cayman Chemical 9001535), N-acetyl aspartic acid (Sigma Aldrich, 00920) were used.
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3

Lipid and Metabolite Standard Protocol

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18:1 glycerophosphoinositol (PI), 18:1 glycerophosphoserine (PS), 18:1 glycerophosphoethanolamine (PE), 18:1 glycerophosphoglycerol (PG), 18:1 monoacylglycerophosphate (PA), 18:1 cardiolipin (CL), and a total ganglioside extract were purchased from Avanti Polar Lipids (Alabaster, AL). Fatty acids (FA) including oleic acid, lignoceric acid, and arachidonic acid, as well as metabolites n-acetylaspartic acid and 2-hydroxyglutarate were purchased from Sigma-Aldrich (St. Louis, MO). Standards were dissolved in chloroform/methanol (CHCl3/MeOH) 1:1 (v/v) at a concentration of 10 μg/mL. A ubiquitin standard (Sigma-Aldrich, St. Louis, MO) was dissolved in acetonitrile/water (ACN/H2O) 60:40 (v/v) with 0.1% formic acid at 1 μg/mL. Direct electrospray ionization (ESI) infusion of the standards was performed at a flow rate of 5 μL/min.
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