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Micropipette

Manufactured by Drummond
Sourced in United States

A micropipette is a laboratory instrument used to accurately measure and transfer small volumes of liquids, typically ranging from a few microliters to a few milliliters. It functions by using a plunger to draw up a predetermined amount of liquid into a disposable tip, which can then be dispensed with precision.

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9 protocols using micropipette

1

Calcium Imaging in Motor Cortex Layers

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The imaging setup is same as described in the section ‘Calcium imaging with a double-μPeriscope’ except an LED (peak wavelength 565 nm, Thorlabs), an excitation filter (555/20 bandpass, AHF), an emission filter (605/55 bandpass, AHF) and a dichroic mirror (cutoff wavelength: 565 nm, AHF). Surgical preparation is same as described in the section ‘Extracellular recordings’. An aluminum head implant was fixed to the skull of the mouse with dental cement and the mice were habituated to head-fixation before imaging. A double-μPeriscope was slowly inserted into the motor cortex so that the upper μPeriscope covered L2/3 (150–300 μm deep from pia) and the lower μPeriscope covered L5 (500–700 μm deep from pia). The calcium indicator Cal-590 AM (AAT Bioquest) was backloaded into a micropipette (Drummond) and slowly injected (at 20 nl/min, total 40–50 nl) to L5 (~600 μm below pia) of the primary motor cortex 1.5–2 hr before imaging experiments. The pipette remained there for at least 5 min after injection. ΔF/F was calculated in the same way as described in the section ‘Calcium imaging with a double-μPeriscope’.
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2

Xenograft Assay for Cartilage and Bone Differentiation

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PDGFRAlow/–PDPN+CADM1+ and PDGFRAlow/–PDPN+CADM1 cells were sorted by flow cytometry and cultured for 7–10 days as previously described.97 (link) Briefly, 5 × 105 cells were resuspended in 5 μL of Matrigel (BD) on ice and then aspirated into a micropipette (Drummond Scientific, 5-000-2010). A small incision was made near the kidney pole to separate the capsule from the renal parenchyma. Matrigel with cells was injected into the kidney pocket. Eight weeks after transplantation, grafts were dissected and fixed in 4% paraformaldehyde at 4 °C for 12 h, decalcified in 10% EDTA at room temperature for 3 days and then dehydrated in 30% sucrose at 4 °C overnight. Grafts were then cryosectioned at 10 μm and stained by Movat Pentachrome Staining Kit (ScyTek, MPS-1) to demonstrate bone and cartilage differentiation. Immunostaining of collagen I and II were also performed on adjacent sections (see below).
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3

Optogenetic Manipulation of Rat Somatosensory Cortex

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Female Wistar rats (P21–23) were initially anesthetized with isoflurane (~ 2% in O2, vol/vol, Abbott) before ketamine/xylazine anesthesia (75/10 mg per kg of body weight, respectively) was administered intraperitoneally and lidocaine (1%, wt/vol, Braun) was injected around the surgical site. Body temperature was maintained at ~ 36 °C by a heating pad and the depth of anesthesia was monitored throughout virus injection. Once anesthetized, the head was stabilized in a stereotaxic instrument (SR-5R, Narishige, Tokyo). The skull was exposed by a skin incision and a small hole (~ 0.5 × 0.5 mm2) was made above the hindlimb area of the primary somatosensory cortex (1.5 mm posterior to bregma and 2.2 mm from midline). AAV1.CamKIIa.hChR2(H134R)-eYFP.WPRE.hGH (Addgene 26969 P) or AAV1.CamKII.GCaMP6f.WPRE.SV40 purchased from the University of Pennsylvania Viral Vector Core was backloaded into a micropipette (Drummond) and was slowly injected (at 20 nl per min, total amount 40–50 nl) to L5. The pipette remained there for another 5 min after injection. The skin was sutured after retracting the pipette.
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4

Intravitreal Injection of P2X7R Antagonist

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Injections were performed under a microscope with a micropipette connected to a microsyringe (Drummond Scientific Co., Broomall, PA, USA) as described (Hu et al., 2010 (link)). P2X7R antagonist BBG (0.8%) was dissolved in sterile saline and injected 5–7 days before IOP elevation. The glass pipette filled with drug was passed through the sclera at a point approximately 1 mm from the limbus into the vitreous cavity. The total volume injected was 5 μl over a 30 s time period.
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5

Measuring Pharmacokinetics of Nanobodies

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Tumor-bearing mice were anesthetized with a mixture of ketamine and xylazine and i.v. injected with 2 nmols (based on fluorophore concentration) of IRDye680RD-conjugated (m)anti-MMR Nbs and IRDye680RD-conjugated (biv)anti-MMR Nbs. Blood was collected by tail vein sampling at 2.5, 5, 10, 30 and 60 min after Nb injection using a micropipette (Drummond Scientific Company). Samples were then acquired with the IVIS Lumina III system (Perkin Elmer). Images were analysed using Living Image 4.3.1 software (Perkin Elmer) and data expressed as Radiant Efficiency. Nb circulatory half-life was calculated with GraphPad, using one-phase decay equation.
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6

Cortical Layer Sensory Stimulation

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All drugs used in this study were prepared on the day of experiment, backloaded to a micropipette (Drummond) and slowly injected (at 20 nl per min, total 40–50 nl) to their target cortical layer. The pipette was angled to avoid damaging the dendrites under study.
Sensory stimulation was provided by a single short electrical pulse (1 ms, 100 V) given to the contralateral hindpaw through a pair of conductive adhesive strips (Skintact).
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7

Non-invasive Tear Fluid Collection and Analysis

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The tear fluid was collected non-invasively during the ocular surface evaluation as reported previously27 (link). The same investigator (HM) collected the tear fluid in all cases. To avoid the effect of eye drops on the ocular surface measurements, participants were instructed not to use any eye drops on the day of tear fluid sample collection. The patient lay on his/her back on the bed and the clinician used a micropipette (Drummond Scientific, Broomall, PA, USA) to collect 2 μl of tear fluid from the external eyelid margins. The collected tear fluid was immediately stored at − 80 °C until analysis. The collected tears were measured using the BD CBA Human Anaphylatoxin Kit (BD Biosciences, San Jose, CA, USA) for CAPs (C3a, C4a, and C5a). The CAPs in the tear fluid were measured according to the previous reports and the manufacturer's instructions17 (link),22 (link).
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8

Clot Diameter Measurement in Microscopic Flow

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The clot attached to the suture was placed in a clean micropipette (Drummond Scientific Company, Broomall, PA), and inserted into a U-shaped sample holder composed of hollow luer lock connectors and silicone tubing (Cole Parmer, Vernon Hills, IL; outer diameter 0.125″). The sample holder was placed in an acrylic water tank with a microscope slide at the bottom allowing visualization of the clot diameter using an inverted microscope (Olympus, IX-71) with a charge-coupled device (CCD) camera (Retiga 2000R, QImaging, Surrey, BC, Canada). The CCD camera images were recorded at a rate of 6 images/minute. The average clot width (CW) was calculated, using a computer program written in Matlab 6.5 R13 (Mathworks, Inc., Natwick, MA). The positions of the two clot-plasma interfaces were determined via an edge-detection routine. The width of the clot at each coordinate along the height of the image (z) was calculated, averaged over all z values, corrected for suture width, and normalized to the average of the clot width during the first six frames. The fractional clot loss (FCL) at 30 minutes can be defined as:
FCL=1-CW30/CW0 where,
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9

Imaging Calcium Dynamics in Hindlimb Cortex

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As shown in Supplementary Fig. 1, the imaging setup consisted of a micro-periscope, an LED (peak wavelength 535 nm, Cree), an excitation filter (555/20 bandpass, AHF), an emission filter (605/55 bandpass, AHF), a dichroic mirror (cutoff wavelength: 565 nm, AHF), a 80 × 80 pixel high-speed CCD camera with frame rate of 125 Hz (Redshirt Imaging), a 10 × infinity corrected objective (58–372, Edmund Optics), and a tube lens (Optem, RL091301-1). The calcium indicator Cal-590 AM (AAT Bioquest) was backloaded into a micropipette (Drummond) and slowly injected (at 20 nl per min, total 40–50 nl) to L5 (~ 1200 μm below the pia) of the hindlimb area 1.5–2 h before imaging experiments. The pipette remained there for at least 5 min after injection. The injection pipette was angled such that spillover dye, if any, would not be loaded in neurons in upper layers of the hindlimb area. ΔF/F was calculated as (FF0)/F0, where F is the fluorescence intensity at any time point and F0 is the average intensity over the prestimulus period for 100 ms. The eYFP fluorescence upon excitation was measured before loading the calcium indicator and was subtracted from ΔF/F.
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