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4 protocols using mouse anti yap1

1

Western Blot Analysis of Metabolic Enzymes

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Mouse tissues were homogenized and lysed by using RIPA buffer (Santa Cruz Biotechnology). Protein contents were measured by using the Bradford assay (Pierce Biotechnology). Detailed steps for western blot analysis were as previously described59 (link). The primary antibodies included goat anti-KYNU, rabbit anti-KMO, mouse anti-KAT1, mouse anti-Cyclin B1, mouse anti-GAPDH (all above antibodies from Santa Cruz Biotechnology); mouse anti-YAP1, mouse anti-phospho-YAP (ser 127), rabbit anti-Erk1/2 (Thr202/Tyr204), rabbit anti-Erk1/2, rabbit anti-c-Myc, rabbit anti-phospho-Src (Tyr527) and rabbit anti-Src (all seven antibodies from Cell Signaling). The relative protein levels were calculated by normalizing to GAPDH protein as a loading reference by using ImageJ.
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2

Immunohistochemical Analysis of Cellular Markers

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IHC was performed on the Leica Bond automated staining platform using the Leica Biosystems Refine Detection Kit. Antibodies and dilutions used for IHC include: 1:200 rabbit anti-ATOH1 (Proteintech, 21215-1-AP) and 1:100 mouse anti-YAP1 (Santa Cruz Biotechnology, SC101199), each with citrate antigen retrieval; and 1:100 rabbit anti-TAZ (Cell Signaling Technology, 72804) and 1:50 mouse anti-KRT20 (DAKO, 72804), each with EDTA antigen retrieval.
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3

Immunofluorescence Staining of Cell Markers

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Antibodies used in this study are as follows: mouse anti‐CD71/TFRC (BD Biosciences 555534), mouse anti‐CD107a/LAMP1 (BD Biosciences 555798), mouse anti‐YAP1 (Santa‐Cruz 63.7), mouse anti‐NPC (mAb414, Abcam), goat anti‐mouse Alexa 488 highly cross‐absorbed secondary antibody (Life Technologies A11029).
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4

Western Blot Analysis of Signaling Proteins

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Cells and biopsies were lysed with a buffer containing 1% Triton X‐l00, 50 mM HEPES (pH 7.5), 150 mM NaC1, 10% glycerol, 1.5 mM MgCl2, 5 mM EGTA, protease inhibitors (4 mM phenyl methylsulfonyl fluoride and 100 mg/ml aprotinin; Sigma‐Aldrich), phosphatase inhibitors (10 mM sodium orthovanadate and 20 mM sodium pyrophosphate; Sigma‐Aldrich) and processed. For direct immunoblot analysis, we employed 20 μg of total cellular proteins, re‐suspended with 25 μl of loading buffer, boiled for 5 minutes and loaded on SDS‐PAGE for Western blot (WB). The antibodies for WB were used at the condition suggested by the suppliers: mouse anti‐Dvl3 (sc‐271295, 1/500; Santa Cruz Biotechnology, Texas, USA), mouse anti‐Yap1 (sc‐376830, 1/500; Santa Cruz Biotechnology), mouse anti‐Smad1/2/3 (sc‐7960, 1/500; Santa Cruz Biotechnology), rabbit anti‐cyclin D1 (E3P5S #55506, 1/1000; Cell Signaling) and mouse anti‐beta‐actin (sc‐81178, 1/1000; Santa Cruz Biotechnology). The WB has been acquired by the ChemiDoc MP Imaging System (Bio‐Rad Laboratories, Inc., California, USA), and the corresponding bands have been quantified by Image lab 6.1.0 (Bio‐Rad Laboratories, Inc.).
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